Publications

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Tilghman S, Astin HS, Brinkley W, Chilton MD, Cummings MP, Ehrenberg RG, Fox MF, Glenn K, Green PJ, Hans S et al..  1998.  Trends in the Early Careers of Life Scientists.
Oard D, Ertunc F.  2002.  Translation-based indexing for cross-language retrieval. Advances in Information Retrieval. :425-447.
Everett LJ, Jensen ST, Hannenhalli S.  2011.  Transcriptional Regulation Via TF-Modifying Enzymes: An Integrative Model-Based Analysis. Nucleic Acids ResearchNucl. Acids Res.. 39(12):e78-e78-e78-e78.
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, El-Sayed NM, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non‐lethal cold shock. Environmental Microbiology. 7(6):789-797.
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
El-Sana J, Varshney A.  1998.  Topology simplification for polygonal virtual environments. Visualization and Computer Graphics, IEEE Transactions on. 4(2):133-144.
Hu Y, Zhai K, Edelman V, Boyd-Graber J.  Submitted.  Topic Models for Translation Domain Adaptation. mimno.infosci.cornell.edu.
Eidelman V, Boyd-Graber J, Resnik P.  2012.  Topic Models for Dynamic Translation Model Adaptation. Association for Computational Linguistics.
Eom H, Hollingsworth J.  2001.  A tool to help tune where computation is performed. IEEE Transactions on Software Engineering. 27(7):618-629.
Abd-Almageed W, Blace RE, Eltoweissy M.  2011.  Threat-Aware Clustering in Wireless Sensor Networks. IFIP Advances in Information and Communication Technology (AICT). 264(264):1-12.
Lathan C, Vice J M, Tracey M, Plaisant C, Druin A, Edward K, Montemayor J.  2001.  Therapeutic play with a storytelling robot. CHI '01 extended abstracts on Human factors in computing systems. :27-28.
Johnson B, Shneiderman B, Baker MJ, Eick SG.  1999.  TennisViewer: A Browser for Competition Trees. Readings in information visualization: using vision to think. :149-149.
Hutchinson H, Mackay W, Westerlund B, Bederson BB, Druin A, Plaisant C, Beaudouin-Lafon M, Conversy S, Evans H, Hansen H et al..  2003.  Technology probes: inspiring design for and with families. Proceedings of the SIGCHI conference on Human factors in computing systems. :17-24.
Hutchinson H, Mackay W, Westerlund B, Bederson BB, Druin A, Plaisant C, Beaudouin-Lafon M, Conversy S, Evans H, Hansen H et al..  2003.  Technology probes: inspiring design for and with families. Proceedings of the SIGCHI conference on Human factors in computing systems. :17-24.
Lacroix Z, Raschid L, Eckman BA.  2004.  Techniques for optimization of queries on integrated biological resources. Journal of bioinformatics and computational biology. 2(2):375-412.
Torbert S, Vishkin U, Tzur R, Ellison DJ.  2010.  Is teaching parallel algorithmic thinking to high school students possible?: one teacher's experience Proceedings of the 41st ACM technical symposium on Computer science education. :290-294.
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Evans F, Skiena S, Varshney A.  2002.  System and method for entering text in a virtual environment. : 09/364,433(6407679)
El-Sayed NM, Donelson JE.  1997.  A survey of the Trypanosoma brucei rhodesiense genome using shotgun sequencing. Molecular and Biochemical Parasitology. 84(2):167-178.
Zhang N, Wang Q, Ehlinger A, Randles L, Lary JW, Kang Y, Haririnia A, Storaska AJ, Cole JL, Fushman D et al..  2009.  Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13. Molecular Cell. 35(3):280-290.
Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N.  2006.  Structure of social contact networks and their impact on epidemics. DIMACS Series in Discrete Mathematics and Theoretical Computer Science. 70:181-181.
Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS et al..  2012.  Structure, function and diversity of the healthy human microbiome. Nature. 486:207-214.
Eubank S, Kumar AVS, Marathe MV, Srinivasan A, Wang N.  2004.  Structural and algorithmic aspects of massive social networks. Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms. :718-727.
Evans F, Skiena S, Varshney A.  1996.  Stripe: a software tool for efficient triangle strips. ACM SIGGRAPH 96 Visual Proceedings: The art and interdisciplinary programs of SIGGRAPH '96. :153–-153–.
Plaisant C, Druin A, Lathan C, Dakhane K, Edwards K, Vice J M, Montemayor J.  2000.  A storytelling robot for pediatric rehabilitation. Proceedings of the fourth international ACM conference on Assistive technologies. :50-55.

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