Publications

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Submitted
Ye P, EDU UMD, Doermann D.  Submitted.  Combining preference and absolute judgements in a crowd-sourced setting. ics.uci.edu.
2018
Stamps BW, Leddy MB, Plumlee MH, Hasan NA, Colwell RR, Spear JR.  2018.  Characterization of the Microbiome at the World’s Largest Potable Water Reuse Facility. Frontiers in Microbiology.
Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R et al..  2018.  Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments. Frontiers in Microbiology.
2017
Leddy MB, Hasan NA, Subramanian P, Heberling C, Cotruvo J, Colwell RR.  2017.  Characterization of Microbial Signatures From Advanced Treated Wastewater Biofilms. Journal - American Water Works Association. 109:E503-E512.
Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.  2017.  Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland. Frontiers in Microbiology.
Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR.  2017.  Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139. Frontiers in Microbiology.
Khajanchi BK, Hasan NA, Choi SYoung, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL.  2017.  Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources. BMC Genomics.
Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR et al..  2017.  Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. mBio. (4)
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)
Carpenter MR, Kalburge SS, Borowski JD, Peters MC, Colwell RR, E. Boyd F.  2017.  CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules. Journal of Bacteriology. (10)
2016
Sanhueza D, Chevillon C, Colwell RR, Babonneau J, Marion E, Marsollier L, gan çoisé.  2016.  Chitin promotes Mycobacterium ulcerans growth. FEMS Microbiology Ecology. 928565871(6):fiw067.
Vezzulli L, Grande C, Reid PC, laouët Pé, Edwards M, fle MG ö, Brettar I, Colwell RR, Pruzzo C.  2016.  Climate influence on Vibrio and associated human diseases during the past half-century in the coastal North Atlantic. Proceedings of the National Academy of Sciences. :E5062-E5071.
Rashid M-ur, Almeida M, Azman AS, Lindsay BR, Sack DA, Colwell RR, Huq A, J. Morris G, Alam M, O. Stine C.  2016.  Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1. FEMS Microbiology Letters. 36389(12):fnw116.
Cardone A, Brady M, Sriram R., Pant H.C, Hassan S.A.  2016.  Computational study of the inhibitory mechanism of the kinase CDK5 hyperactivity by peptide p5 and derivation of a pharmacophore. Journal of Computer-Aided Molecular Design. 30(6):513-521.
Ponnusamy D, Kozlova EV, Sha J, Erova TE, Azar SR, Fitts EC, Kirtley ML, Tiner BL, Andersson JA, Grim CJ et al..  2016.  Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis. Proceedings of the National Academy of Sciences. 11312161268(3321029):722-727.
2015
Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, W. Johnson E, Crandall KA.  2015.  Concordance and discordance of sequence survey methods for molecular epidemiology. PeerJ. (8105394):e761.
2014
Dachman-Soled D, Mahmoody M, Malkin T.  2014.  Can Optimally-Fair Coin Tossing Be Based on One-Way Functions? Theory of Cryptography. :217-239.
2013
Agrawal M, Doermann D.  2013.  Clutter noise removal in binary document images. International Journal on Document Analysis and Recognition (IJDAR). 16(4):351-369.
Hara K, Le V, Froehlich J.  2013.  Combining Crowdsourcing and Google Street View to Identify Street-level Accessibility Problems. CHI 2013 To Appear.
Preston ND, Daszak P, Colwell RR.  2013.  Current Topics in Microbiology and Immunology One Health: The Human-Animal-Environment Interfaces in Emerging Infectious Diseases The Human Environment Interface: Applying Ecosystem Concepts to Health. 365:83-100.
2012
Choi SGeol, Dachman-Soled D, Yung M.  2012.  On the Centrality of Off-Line E-Cash to Concrete Partial Information Games. Security and Cryptography for Networks. :264-280.
Zhuolin Jiang, Lin Z, Davis LS.  2012.  Class consistent k-means: Application to face and action recognition. Computer Vision and Image Understanding. 116(6):730-741.
Song D, Elaine Shi, Fischer I, Shankar U.  2012.  Cloud Data Protection for the Masses. Computer. 45(1):39-45.
Xie B, Tom Yeh, Walsh G, Watkins I, Huang M.  2012.  Co-designing an e-health tutorial for older adults. Proceedings of the 2012 iConference. :240-247.
Nikolova S, Boyd-Graber J, Fellbaum C.  2012.  Collecting Semantic Similarity Ratings to Connect Concepts in Assistive Communication Tools. Modeling, Learning, and Processing of Text Technological Data StructuresModeling, Learning, and Processing of Text Technological Data Structures. 370:81-93.

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