Publications

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Peng X, Mount SM.  1995.  Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Molecular and Cellular BiologyMol. Cell. Biol.. 15(11):6273-6282.
Perlis D.  1976.  Group algebras and model theory. Illinois journal of mathematics. 20(2):298-305.
Phillippy AM, Schatz MC, Pop M.  2008.  Genome assembly forensics: finding the elusive mis-assembly. Genome Biology. 9(3):R55-R55.
Plaisant C.  1993.  Guide to Opportunities in Volunteer Archaeology: case study on the use of a hypertext system in a museum exhibit. Sparks of innovation in human-computer interactionSparks of innovation in human-computer interaction. :223-223.
Plangprasopchok A, Lerman K, Getoor L.  2010.  Growing a tree in the forest: constructing folksonomies by integrating structured metadata. Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining. :949-958.
Pop M, Salzberg SL, Shumway M.  2002.  Genome Sequence Assembly: Algorithms and Issues. Computer. 35(7):47-54.
Pop M.  2009.  Genome Assembly Reborn: Recent Computational Challenges. Briefings in Bioinformatics. 10(4):354-366.
Priyadarshi AK, Gupta SK.  2004.  Geometric algorithms for automated design of multi-piece permanent molds. Computer-Aided Design. 36(3):241-260.
Priyadarshi AK, Gupta SK.  2007.  Generating Multi-Stage Molding Plans for Articulated Assemblies. :56-63.
Pruzzo C, Vezzulli L, Colwell RR.  2008.  Global impact of Vibrio cholerae interactions with chitin. Environmental Microbiology. 10(6):1400-1410.
Pugh W, Wonnacott D.  1995.  Going beyond integer programming with the Omega test to eliminate false data dependences. IEEE Transactions on Parallel and Distributed Systems. 6(2):204-211.
Punch WF, Rand W.  2000.  GP+ echo+ subsumption= improved problem solving. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2000). :411-418.
R
Rand W, Blikstein P, Wilensky U.  2008.  GoGoBot: group collaboration, multi-agent modeling, and robots. Proceedings of the 7th international joint conference on Autonomous agents and multiagent systems: demo papers. :1715-1716.
Rashed S.M, Mannan S.B, Johura F.-T., Islam M.T, Sadique A., Watanabe H., Sack R.B, Huq A., Colwell RR, Cravioto A. et al..  2012.  Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006-2011. Journal of Medical Microbiology. :1736-1745.
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H|[eacute]|, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423(6935):81-86.
Rodrigues EM, Milic-Frayling N, Smith M, Shneiderman B, Hansen D.  2011.  Group-in-a-Box Layout for Multi-faceted Analysis of Communities. Privacy, Security, Risk and Trust (PASSAT), 2011 IEEE Third International Conference on and 2011 IEEE Third International Confernece on Social Computing (SocialCom). :354-361.
Rohlfing A-K, Miteva Y, Hannenhalli S, Lamitina T.  2010.  Genetic and Physiological Activation of Osmosensitive Gene Expression Mimics Transcriptional Signatures of Pathogen Infection in C. elegans. PLoS ONEPLoS ONE. 5(2):e9010-e9010.
Roussopoulos N, Kelley S.  1984.  GDDT--A graphical design and documentation tool for software development. Computers & Graphics. 8(3):309-323.
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Saha B, Getoor L.  2008.  Group proximity measure for recommending groups in online social networks. networks. 1(6):5-5.
Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly M M, Brown IH, Couacy-Hymann E, De Mia G M, Dung D H et al..  2007.  Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses. Emerging Infectious DiseasesEmerg Infect Dis. 13(5):713-718.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M et al..  2012.  GAGE: A Critical Evaluation of Genome Assemblies and Assembly Algorithms. Genome Research. 22(3):557-567.
Sauvola J, Doermann D, Kauniskangas H, Shin C, Koivusaari M, Pietikainen M.  1997.  Graphical Tools and Techniques for Querying Document Databases. BSDIA. :213-224.
Sethupathy P, Giang H, Plotkin JB, Hannenhalli S.  2008.  Genome-Wide Analysis of Natural Selection on Human Cis-Elements. PLoS ONEPLoS ONE. 3(9):e3137-e3137.
Shah R, Lu Y, Hinkle CC, McGillicuddy FC, Kim R, Hannenhalli S, Cappola TP, Heffron S, Wang XM, Mehta NN et al..  2009.  Gene Profiling of Human Adipose Tissue During Evoked Inflammation In Vivo. DiabetesDiabetes. 58(10):2211-2219.
Shahri H H, Namata G, Navlakha S, Deshpande A, Roussopoulos N.  2007.  A graph-based approach to vehicle tracking in traffic camera video streams. Proceedings of the 4th workshop on Data management for sensor networks: in conjunction with 33rd International Conference on Very Large Data Bases. :19-24.

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