Publications

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2011
Lieberman MD, Taheri S, Guo H, Mirrashed F, Yahav I, Aris A, Shneiderman B.  2011.  Visual Exploration across Biomedical Databases. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8(2):536-550.
2009
Ghodsi M, Pop M.  2009.  Inexact Local Alignment Search over Suffix Arrays. IEEE International Conference on Bioinformatics and Biomedicine, 2009. BIBM '09. :83-87.
2008
Giancarlo R, Hannenhalli S.  2008.  Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5(4):482-483.
2004
Lacroix Z, Moths T, Parekh K, Raschid L, Vidal M-E.  2004.  Exploiting multiple paths to express scientific queries. 16th International Conference on Scientific and Statistical Database Management, 2004. Proceedings. :357-360.
2003
Hochheiser H, Baehrecke EH, Mount SM, Shneiderman B.  2003.  Dynamic querying for pattern identification in microarray and genomic data. 2003 International Conference on Multimedia and Expo, 2003. ICME '03. Proceedings. 3:III-453-6vol.3-III-453-6vol.3.
1997
Dancik V, Hannenhalli S, Muthukrishnan S.  1997.  Hardness of flip-cut problems from optical mapping [DNA molecules application]. Compression and Complexity of Sequences 1997. Proceedings. :275-284.
1994
Borah M, Bajwa RS, Hannenhalli S, Irwin MJ.  1994.  A SIMD solution to the sequence comparison problem on the MGAP. International Conference on Application Specific Array Processors, 1994. Proceedings. :336-345.