Publications

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Journal Articles
Haas BJ, Delcher AL, Mount SM, Wortman JR, Jr R SK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD et al..  2003.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids ResearchNucl. Acids Res.. 31(19):5654-5666.
Pruzzo C, Tarsi R, Lleò MM, Signoretto C, Zampini M, Colwell RR, Canepari P.  2002.  In vitro adhesion to human cells by viable but nonculturable Enterococcus faecalis. Current microbiology. 45(2):105-110.
Tanin E, Beigel R, Shneiderman B.  1996.  Incremental data structures and algorithms for dynamic query interfaces. ACM SIGMOD Record. 25(4):21-24.
Grinter RE, W. Edwards K, Chetty M, Poole ES, Sung J-Y, Yang J, Crabtree A, Tolmie P, Rodden T, Greenhalgh C et al..  2009.  The Ins and Outs of Home Networking: The Case for Useful and Usable Domestic Networking. ACM Trans. Comput.-Hum. Interact.. 16(2):8:1-8:28.
Hourcade JP, Bederson BB, Druin A, Rose A, Farber A, Takayama Y.  2003.  The International Children's Digital Library: viewing digital books online. Interacting with Computers. 15(2):151-167.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Ishita E, Oard D, Fleischmann KR, Cheng AS, Templeton TC.  2010.  Investigating multi-label classification for human values. Proceedings of the American Society for Information Science and Technology. 47(1):1-4.
Miller BP, Clark M, Hollingsworth J, Kierstead S, Lim S-S, Torzewski T.  1990.  IPS-2: the second generation of a parallel program measurement system. IEEE Transactions on Parallel and Distributed Systems. 1(2):206-217.
Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA et al..  2012.  Vibrio cholerae in a historically cholera-free country. Environmental Microbiology Reports. (4):381-389.
Kirchberger P.C, Turnsek M., Hunt D.E, Haley B.J, Colwell RR, Polz M.F, Tarr C.L, Boucher Y..  2014.  Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.
Kirchberger P.C, Turnsek M., Hunt D.E, Haley B.J, Colwell RR, Polz M.F, Tarr C.L, Boucher Y..  2014.  Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.
Trappe W, Wu M, Liu KJR.  2002.  Joint coding and embedding for collusion-resistant fingerprinting. Proceedings of the European Signal Processing Conference, EUSIPCO.
Taxén G, Druin A, Fast C, Kjellin M.  2001.  KidStory: A technology design partnership with children. Behaviour & Information Technology. 20(2):119-125.
Zhang Z, JaJa JF, Bader DA, Kalluri SNV, Song H, El Saleous N, Vermote E, Townshend JRG.  2000.  Kronos: A software system for the processing and retrieval of large-scale AVHRR data sets. PE & RS- Photogrammetric Engineering and Remote Sensing. 66(9):1073-1082.
Doppa J, Yu J, Tadepalli P, Getoor L.  2010.  Learning algorithms for link prediction based on chance constraints. Machine Learning and Knowledge Discovery in Databases. :344-360.
Getoor L, Friedman N, Koller D, Taskar B.  2001.  Learning probabilistic models of relational structure. MACHINE LEARNING-INTERNATIONAL WORKSHOP. :170-177.
Elman H, Howle VE, Shadid J, Silvester D, Tuminaro R.  2007.  Least squares preconditioners for stabilized discretizations of the Navier-Stokes equations. SIAM J. Sci. Comput. 30(1):290-311.
Tzoumas K, Deshpande A, Jensen CS.  2011.  Lightweight Graphical Models for Selectivity Estimation Without Independence Assumptions. Proceedings of the VLDB Endowment. 4(7)
Basili VR, Lindvall M, Regardie M, Seaman C, Heidrich J, Munch J, Rombach D, Trendowicz A.  2010.  Linking Software Development and Business Strategy Through Measurement. Computer. 43(4):57-65.
Mihaila GA, Raschid L, Tomasic A.  2002.  Locating and accessing data repositories with WebSemantics. The VLDB journal. 11(1):47-57.
Turaga P, Chellappa R, V.S. Subrahmanian, Udrea O.  2008.  Machine Recognition of Human Activities: A Survey. Circuits and Systems for Video Technology, IEEE Transactions on. 18(11):1473-1488.
Meng HM, Chen B, Khudanpur S, Levow G-A, Lo W-K, Oard D, Schone P, Tang K, Wang H-M, Wang J.  2004.  Mandarin-English Information (MEI): investigating translingual speech retrieval. Computer Speech & Language. 18(2):163-179.
Faulk S, Gustafson J, Johnson P, Porter A, Tichy W, Votta L.  2004.  Measuring HPC productivity. International Journal of High Performance Computing Applications. 18(4):459-473.

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