Publications

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Submitted
Hu Y, Zhai K, Edelman V, Boyd-Graber J.  Submitted.  Topic Models for Translation Domain Adaptation. mimno.infosci.cornell.edu.
2019
Le ST, Guros NB, Bruce RC, Cardone A, Amin ND, Zhang S, Klauda J, Pant HC, Richter CA, Balijepalli A.  2019.  Quantum Capacitance-Limited MoS2 Biosensors Enable Remote Label-Free Enzyme Measurements. Nanoscale.
2017
Khajanchi BK, Hasan NA, Choi SYoung, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL.  2017.  Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources. BMC Genomics.
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.
2016
Motesharrei S, Rivas J, Kalnay E, Asrar GR, Busalacchi AJ, Cahalan RF, Cane MA, Colwell RR, Feng K, Franklin RS et al..  2016.  Modeling Sustainability: Population, Inequality, Consumption, and Bidirectional Coupling of the Earth and Human Systems. National Science Review. :nww081.
2015
Zaitchik B.F, Guikema S.D, Haley B.J, Taviani E., Chen A., Brown M.E., Huq A., Colwell RR.  2015.  Use of Environmental Parameters to Model Pathogenic Vibrios in Chesapeake Bay. Journal of Environmental Informatics.
2013
Zhai K, Boyd-Graber J.  2013.  Online Latent Dirichlet Allocation with Infinite Vocabulary. International Conference on Machine Learning. PDF icon 2013_icml_infvoc.pdf (985.1 KB)
Boyd-Graber J, Glasgow K, Zajac JS.  2013.  Spoiler Alert: Machine Learning Approaches to Detect Social Media Posts with Revelatory Information.
2012
Lin HC, Goldstein S, Mendelowitz L, Zhou S, Wetzel J, Schwartz DC, Pop M.  2012.  AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformatics. 13(1)
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M et al..  2012.  GAGE: A Critical Evaluation of Genome Assemblies and Assembly Algorithms. Genome Research. 22(3):557-567.
Blanco MAndres, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y.  2012.  Global secretome analysis identifies novel mediators of bone metastasis. Cell Research. 22(9):1339-1355.
Zajic D, Doermann D, Bloodgood M, Rodrigues P, Ye P, Zotkina E.  2012.  A Hybrid System for Error Detection in Electronic Dictionaries. Technical Reports of the Center for the Advanced Study of Language.
Zajic D, Doermann D, Bloodgood M, Rodrigues P, Ye P, Zotkina E.  2012.  A Hybrid System for Error Detection in Electronic Dictionaries. Technical Reports of the Center for the Advanced Study of Language.
Zhai K, Hu Y, Williamson S, Boyd-Graber J.  2012.  Modeling Images using Transformed Indian Buffet Processes. International Conference of Machine Learning.
Zhai K, Boyd-Graber J, Asadi N, Alkhouja M.  2012.  Mr. LDA: A Flexible Large Scale Topic Modeling Package using Variational Inference in MapReduce. Proceedings of ACM International Conference on World Wide Web, 2012.
Zheleva E, Terzi E, Getoor L.  2012.  Privacy in Social Networks. Synthesis Lectures on Data Mining and Knowledge Discovery. 3(1):1-85.
Bloodgood M, Ye P, Rodrigues P, Zajic D, Doermann D.  2012.  A Random Forest System Combination Approach for Error Detection in Digital Dictionaries. Innovative hybrid approaches to the processing of textual data, EACL 2012 Workshop. :78-86.
Rosenzweig R, Bronner V, Zhang D, Fushman D, Glickman MH.  2012.  Rpn1 and Rpn2 coordinate ubiquitin processing factors at the proteasome. Journal of Biological ChemistryJ. Biol. Chem..
Lai M-Y, Zhang D, LaRonde-LeBlanc N, Fushman D.  2012.  Structural and biochemical studies of the open state of Lys48-linked diubiquitin. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research.
Zhuolin Jiang, Zhang G, Davis LS.  2012.  Submodular Dictionary Learning for Sparse Coding. IEEE conference on Computer Vision and Pattern Recognition.
Zelkowitz MV.  2012.  What have we learned about software engineering? Communications of the ACM. 55(2):38-39.
2011
Garay JA, Katz J, Kumaresan R, Zhou HS.  2011.  Adaptively secure broadcast, revisited. Proceedings of the 30th Annual ACM Symposium on Principles of Distributed Computing.
Falk J, Zebelein C, Keinert J, Haubelt C, Teich J, Bhattacharyya SS.  2011.  Analysis of SystemC actor networks for efficient synthesis. ACM Trans. Embed. Comput. Syst.. 10(2):18:1-18:34.
Plishker W, Zaki GF, Bhattacharyya SS, Clancy C, Kuykendall J.  2011.  Applying graphics processor acceleration in a software defined radio prototyping environment. 2011 22nd IEEE International Symposium on Rapid System Prototyping (RSP). :67-73.

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