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2012
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Senoh M, Ghosh‐Banerjee J, Ramamurthy T, Colwell RR, Miyoshi S-ichi, Nair BG, Takeda Y.  2012.  Conversion of viable but nonculturable enteric bacteria to culturable by co‐culture with eukaryotic cells. Microbiology and Immunology. 56(5):342-345.
Froehlich J, Findlater L, Ostergren M, Ramanathan S, Peterson J, Wragg I, Larson E, Fu F, Bai M, Patel S.  2012.  The design and evaluation of prototype eco-feedback displays for fixture-level water usage data. :2367-2376.
Rotman D, Preece J, Hammock J, Procita K, Hansen D, Parr C, Lewis D, Jacobs DW.  2012.  Dynamic changes in motivation in collaborative citizen-science projects. Proceedings of the ACM 2012 conference on Computer Supported Cooperative Work. :217-226.
Kamara S, Papamanthou C, Roeder T.  2012.  Dynamic Searchable Symmetric Encryption. CCS '12 Proceedings of the 2012 ACM Conference on Computer and Communications Security . :965-976.
Ture F, Oard D, Resnik P.  2012.  Encouraging consistent translation choices. Proceedings of the 2012 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies. :417–426.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M et al..  2012.  GAGE: A Critical Evaluation of Genome Assemblies and Assembly Algorithms. Genome Research. 22(3):557-567.
Rashed S.M, Mannan S.B, Johura F.-T., Islam M.T, Sadique A., Watanabe H., Sack R.B, Huq A., Colwell RR, Cravioto A. et al..  2012.  Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006-2011. Journal of Medical Microbiology. :1736-1745.
Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Boyd-Graber J, Sayeed AB, Rusk B, Weinberg A.  2012.  Grammatical structures for word-level sentiment detection. North American Association of Computational Linguistics.
Zajic D, Doermann D, Bloodgood M, Rodrigues P, Ye P, Zotkina E.  2012.  A Hybrid System for Error Detection in Electronic Dictionaries. Technical Reports of the Center for the Advanced Study of Language.
Del Canto F, Botkin DJ, Valenzuela P, Popov V, Ruiz-Perez F, Nataro JP, Levine MM, Stine OC, Pop M, Torres AG et al..  2012.  Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli. Infection and immunity. 80(8):2791-2801.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Alam M, Islam TM, Rashed S M, Johura F-T, Bhuiyan NA, Delgado G, Morales R, Mendez J L, Navarro A, Watanabe H et al..  2012.  Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical Microbiology.
Vezzulli L, Brettar I, Pezzati E, Reid PC, Colwell RR, Höfle MG, Pruzzo C.  2012.  Long-term effects of ocean warming on the prokaryotic community: evidence from the vibrios. The ISME Journal. 6111114882511(1):21-30.
Wu S, Gong L, Rand W, Raschid L.  2012.  Making Recommendations in a Microblog to Improve the Impact of a Focal User. 6th ACM Conference on Recommender Systems (RecSys).
Wu S, Gong L, Rand W, Raschid L.  2012.  Making Recommendations in a Microblog to Improve the Impact of a Focal User. 6th ACM Conference on Recommender Systems (RecSys).
Kee H, Shen C-C, Bhattacharyya SS, Wong I, Rao Y, Kornerup J.  2012.  Mapping Parameterized Cyclo-static Dataflow Graphs onto Configurable Hardware. Journal of Signal Processing Systems. 66(3):285-301.
Dellarocas C, Katona Z, Rand W.  2012.  Media, Aggregators and the Link Economy: Strategic Hyperlink Formation in Content Networks. Management Science.
Bloodgood M, Ye P, Rodrigues P, Zajic D, Doermann D.  2012.  A Random Forest System Combination Approach for Error Detection in Digital Dictionaries. Innovative hybrid approaches to the processing of textual data, EACL 2012 Workshop. :78-86.
Konte M, Feamster N.  2012.  Re-wiring Activity of Malicious Networks. Passive and Active MeasurementPassive and Active Measurement. 7192:116-125.
Stauder M, Huq A, Pezzati E, Grim CJ, Ramoino P, Pane L, Colwell RR, Pruzzo C, Vezzulli L.  2012.  Role of GbpA protein, an important virulence-related colonization factor, for Vibrio cholerae's survival in the aquatic environment. Environmental Microbiology Reports. (4):439-445.
Rosenzweig R, Bronner V, Zhang D, Fushman D, Glickman MH.  2012.  Rpn1 and Rpn2 coordinate ubiquitin processing factors at the proteasome. Journal of Biological ChemistryJ. Biol. Chem..

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