Publications

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2004
Priyadarshi AK, Gupta SK.  2004.  Geometric algorithms for automated design of multi-piece permanent molds. Computer-Aided Design. 36(3):241-260.
Li X, Gupta SK.  2004.  Geometric algorithms for automated design of rotary-platen multi-shot molds. Computer-Aided Design. 36(12):1171-1187.
Karnik M, Gupta SK, Magrab EB.  2004.  Geometric Containment Analysis for Rotational Parts.
Chandra R, Lefever RM, Joshi KR, Cukier M, Sanders WH.  2004.  A global-state-triggered fault injector for distributed system evaluation. Parallel and Distributed Systems, IEEE Transactions on. 15(7):593-605.
Wang JZ, M. Wu, Trappe W, Liu KJR.  2004.  Group-oriented fingerprinting for multimedia forensics. EURASIP J. Appl. Signal Process.. 2004:2153-2173.
Khanna S, Srinivasan A.  2004.  Guest editors' foreword: special issue: 35th annual ACM symposium on theory of computing. Journal of Computer and System Sciences. 69(3):305-305.
2005
Kale A, Cuntoor N, Yegnanarayana B, Rajagopalan A, Chellappa R.  2005.  Gait-based human identification using appearance matching. Optical and Digital Techniques for Information Security. :271-295.
Parker A, Nau DS, V.S. Subrahmanian.  2005.  Game-tree search with combinatorially large belief states. 19:254-254.
Wang J, Hannenhalli S.  2005.  Generalizations of Markov model to characterize biological sequences. BMC Bioinformatics. 6(1):219-219.
Axelrod A, Golbeck J, Shneiderman B.  2005.  Generating and Querying Semantic Web Environments for Photo Libraries (2005). Institute for Systems Research Technical Reports.
Asgari S, Hochstein L, Basili VR, Zelkowitz MV, Hollingsworth J, Carver J, Shull F.  2005.  Generating testable hypotheses from tacit knowledge for high productivity computing. Proceedings of the second international workshop on Software engineering for high performance computing system applications. :17-21.
MacLeod A, Tweedie A, McLellan S, Taylor S, Hall N, Berriman M, El-Sayed NM, Hope M, Turner CMR, Tait A.  2005.  The genetic map and comparative analysis with the physical map of Trypanosoma brucei. Nucleic acids research. 33(21):6688-6688.
Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, Bartholomeu DC, Lennard NJ, Caler E, Hamlin NE, Haas B et al..  2005.  The genome of the African trypanosome Trypanosoma brucei. Science. 309(5733):416-416.
Loftus B, Anderson I, Davies R, Alsmark UCM, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ et al..  2005.  The genome of the protist parasite Entamoeba histolytica. Nature. 433(7028):865-868.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science. 309(5733)
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.. 79(11):6610-6619.
Bushman F, Lewinski M, Ciuffi A, Barr S, Leipzig J, Hannenhalli S, Hoffmann C.  2005.  Genome-wide analysis of retroviral DNA integration. Nat Rev MicroNat Rev Micro. 3(11):848-858.
Freedman MJ, Vutukuru M, Feamster N, Balakrishnan H.  2005.  Geographic locality of IP prefixes. Proceedings of the 5th ACM SIGCOMM conference on Internet Measurement. :13-13.
Gupta SK, Saini SK, Spranklin BW, Yao Z.  2005.  Geometric algorithms for computing cutter engagement functions in 2.5D milling operations. Computer-Aided Design. 37(14):1469-1480.
Karnik M, Gupta SK, Magrab EB.  2005.  Geometric algorithms for containment analysis of rotational parts. Computer-Aided Design. 37(2):213-230.
Colwell RR.  2005.  Global microbial ecology of Vibrio cholerae. Oceans and health: pathogens in the marine environment. :297-305.
Yaman F, Nau DS, V.S. Subrahmanian.  2005.  Going far, logically. 19:615-615.
Udrea O, Deng Y, Ruckhaus E, V.S. Subrahmanian.  2005.  A graph theoretical foundation for integrating RDF ontologies. PROCEEDINGS OF THE NATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE. 20:1442-1442.

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