Publications

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Journal Articles
Basili VR, Lindvall M, Regardie M, Seaman C, Heidrich J, Munch J, Rombach D, Trendowicz A.  2010.  Linking Software Development and Business Strategy Through Measurement. Computer. 43(4):57-65.
Landau GM, Vishkin U, Nussinov R.  1988.  Locating alignments with k differences for nucleotide and amino acid sequences. Computer applications in the biosciences: CABIOS. 4(1):19-19.
Bhattacharyya SS, Lee EA.  1994.  Looped schedules for dataflow descriptions of multirate signal processing algorithms. Formal Methods in System Design. 5(3):183-205.
Zheng Y, Li H, Doermann D.  2004.  Machine printed text and handwriting identification in noisy document images. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 26(3):337-353.
He D, Oard D, Wang J, Luo J, Demner-Fushman D, Darwish K, Resnik P, Khudanpur S, Nossal M, Subotin M et al..  2003.  Making miracles: Interactive translingual search for cebuano and hindi. ACM Transactions on Asian Language Information Processing (TALIP). 2(3):219-244.
Meng HM, Chen B, Khudanpur S, Levow G-A, Lo W-K, Oard D, Schone P, Tang K, Wang H-M, Wang J.  2004.  Mandarin-English Information (MEI): investigating translingual speech retrieval. Computer Speech & Language. 18(2):163-179.
Meng HM, Chen B, Khudanpur S, Levow G-A, Lo W-K, Oard D, Schone P, Tang K, Wang H-M, Wang J.  2004.  Mandarin-English Information (MEI): investigating translingual speech retrieval. Computer Speech & Language. 18(2):163-179.
Druin A, Jaeger PT, Golbeck J, Fleischmann KR, Jimmy Lin, Qu Y, Wang P, Xie B.  2009.  The Maryland Modular Method: An Approach to Doctoral Education in Information Studies. Journal of education for library and information science. 50(4):293-301.
Wan L-B, Pan H, Hannenhalli S, Cheng Y, Ma J, Fedoriw A, Lobanenkov V, Latham KE, Schultz RM, Bartolomei MS.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. Development. 135(16):2729-2738.
Wan L-B, Pan H, Hannenhalli S, Cheng Y, Ma J, Fedoriw A, Lobanenkov V, Latham KE, Schultz RM, Bartolomei MS.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. Development. 135(16):2729-2738.
La RJ, Shayman MA, Bhattacharjee B.  2006.  Measurement-based optimal routing on overlay architectures for unicast sessions. Computer Networks. 50(12):1938-1951.
Lee C H, Varshney A, Jacobs DW.  2005.  Mesh saliency. ACM transactions on graphics. 24(3):659-666.
Liu B, Pop M.  2011.  MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC proceedings. 5(Suppl 2)
Licamele L, Getoor L.  2011.  A method for the detection of meaningful and reproducible group signatures from gene expression profiles. Journal of Bioinformatics and Computational Biology. 9(3):431-451.
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental Microbiology. 5(7):599-606.
Jimmy Lin, Demner-Fushman D.  2006.  Methods for automatically evaluating answers to complex questions. Information Retrieval. 9(5):565-587.
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El-Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC Genomics. 8(1):181-181.
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al..  2017.  The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)
Liu X, Doermann D.  2008.  Mobile Retriever: Access to Digital Documents from their Physical Source. International Journal on Document Analysis and Recognition. 11(1):19-27.
Baker K, Bloodgood M, Dorr BJ, Callison-Burch C, Filardo NW, Piatko C, Levin L, Miller S.  2012.  Modality and Negation in SIMT Use of Modality and Negation in Semantically-Informed Syntactic MT. Computational Linguistics. :1-48.
Baker K, Bloodgood M, Dorr BJ, Filardo NW, Levin L, Piatko C.  2010.  A modality lexicon and its use in automatic tagging. Proceedings of the Seventh conference on International Language Resources and Evaluation (LREC’10). :1402-1407.
Jimmy Lin, Wilbur WJ.  2009.  Modeling actions of PubMed users with n-gram language models. Information retrieval. 12(4):487-503.
Cleaveland R, Natarajan V, Sims S, Luettgen G.  1996.  Modeling and verifying distributed systems using priorities: A case study. Software - Concepts and Tools. 17(2):50-62.
Valancius V, Lumezanu C, Feamster N, Johari R, Vazirani VV.  2011.  Modeling Tiered Pricing in the Internet Transit Market. Arxiv preprint arXiv:1112.3740.

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