Publications

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2012
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Alam M, Islam TM, Rashed S M, Johura F-T, Bhuiyan NA, Delgado G, Morales R, Mendez J L, Navarro A, Watanabe H et al..  2012.  Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical Microbiology.
Zhai K, Boyd-Graber J, Asadi N, Alkhouja M.  2012.  Mr. LDA: A Flexible Large Scale Topic Modeling Package using Variational Inference in MapReduce. Proceedings of ACM International Conference on World Wide Web, 2012.
Zhai K, Boyd-Graber J, Asadi N, Alkhouja M.  2012.  Mr. LDA: A Flexible Large Scale Topic Modeling Package using Variational Inference in MapReduce. Proceedings of ACM International Conference on World Wide Web, 2012.
Mozumder PK, Banu MA, Naser MN, Ali MS, Alam M, Sack RB, Colwell RR, Huq A.  2012.  Occurrence of protozoans & their limnological relationships in some ponds of Mathbaria, Bangladesh. University Journal of Zoology, Rajshahi University. 29(1):69-71.
Mozumder PK, Banu MA, Naser MN, Ali MS, Alam M, Sack RB, Colwell RR, Huq A.  2012.  Occurrence of protozoans & their limnological relationships in some ponds of Mathbaria, Bangladesh. University Journal of Zoology, Rajshahi University. 29(1):69-71.
Arya S, da Fonseca GD, Mount D.  2012.  Polytope approximation and the Mahler volume. Proceedings of the Twenty-Third Annual ACM-SIAM Symposium on Discrete Algorithms. :29-42.
Khan Z, Bloom JS, Amini S, Singh M, Perlman DH, Caudy AA, Kruglyak L.  2012.  Quantitative measurement of allele‐specific protein expression in a diploid yeast hybrid by LC‐MS. Molecular Systems Biology. 8(1)
Nahar S, Sultana M, Naser NM, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, Sack BR et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260
Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS et al..  2012.  Structure, function and diversity of the healthy human microbiome. Nature. 486:207-214.
Campbell T, Larson E, Cohn G, Alcaide R, Froehlich J, Patel S.  2012.  Systems and Methods for Energy Harvesting in a Contained Fluid Circuit.
2011
Yaklichkin S Y, Darnell DK, Pier MV, Antin PB, Hannenhalli S.  2011.  Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evolutionary Biology. 11(1):302-302.
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12)
Yu X, Fermüller C, Teo C L, Yang Y, Aloimonos Y.  2011.  Active scene recognition with vision and language. 2011 IEEE International Conference on Computer Vision (ICCV). :810-817.
Samet H, Teitler BE, Adelfio MD, Lieberman MD.  2011.  Adapting a map query interface for a gesturing touch screen interface. Proceedings of the 20th international conference companion on World wide web. :257-260.
Arya S, da Fonseca GD, Mount D.  2011.  Approximate polytope membership queries. Proceedings of 43rd Annual ACM Symposium on Theory of Computing. :579-586.
Pei G, Anil Kumar VS, Parthasarathy S, Srinivasan A.  2011.  Approximation algorithms for throughput maximization in wireless networks with delay constraints. 2011 Proceedings IEEE INFOCOM. :1116-1124.
Koponen T, Shenker S, Balakrishnan H, Feamster N, Ganichev I, Ghodsi A, Godfrey BP, McKeown N, Parulkar G, Raghavan B et al..  2011.  Architecting for innovation. SIGCOMM Comput. Commun. Rev.. 41(3):24-36.
Oh S, Hoogs A, Perera A, Cuntoor N, Chen C-C, Lee J T, Mukherjee S, Aggarwal JK, Lee H, Davis LS et al..  2011.  AVSS 2011 demo session: A large-scale benchmark dataset for event recognition in surveillance video. Advanced Video and Signal-Based Surveillance (AVSS), 2011 8th IEEE International Conference on. :527-528.
Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, Langham RJ, Decker SR, Jiang L, Read TD et al..  2011.  Bacillus Anthracis Comparative Genome Analysis in Support of the Amerithrax Investigation. Proceedings of the National Academy of SciencesPNAS. 108(12):5027-5032.
Anand P, King J, Boyd-Graber J, Wagner E, Martell C, Oard D, Resnik P.  2011.  Believe Me—We Can Do This! Annotating Persuasive Acts in Blog Text. Workshops at the Twenty-Fifth AAAI Conference on Artificial Intelligence.
Chafekar D, Anil Kumar V, Marathe M, Parthasarathy S, Srinivasan A.  2011.  Capacity of wireless networks under SINR interference constraints. Wireless Networks. 17(7):1605-1624.
Alam M, Islam A, Bhuiyan NA, Rahim N, Hossain A, Khan GY, Ahmed D, Watanabe H, Izumiya H, Faruque ASG et al..  2011.  Clonal transmission, dual peak, and off-season cholera in Bangladesh. Infection Ecology & Epidemiology. 1(1)
Alam M, Islam A, Bhuiyan NA, Rahim N, Hossain A, Khan GY, Ahmed D, Watanabe H, Izumiya H, Faruque ASG et al..  2011.  Clonal transmission, dual peak, and off-season cholera in Bangladesh. Infection Ecology & Epidemiology. 1(1)

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