Publications

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Journal Articles
Hilke J, Reggia JA, Navarro-Gonzalez R, Lohn J.  1995.  A modified cellular automata model of nucleotide interactions and non-enzymatic transcription of DNA. inbs. :136-136.
Zhang Z, Kalluri SNV, JaJa JF, Liang S, Townshend JRG.  1998.  Models and high-performance algorithms for global BRDF retrieval. Computational Science Engineering, IEEE. 5(4):16-29.
Valancius V, Lumezanu C, Feamster N, Johari R, Vazirani VV.  2011.  Modeling Tiered Pricing in the Internet Transit Market. Arxiv preprint arXiv:1112.3740.
Cleaveland R, Natarajan V, Sims S, Luettgen G.  1996.  Modeling and verifying distributed systems using priorities: A case study. Software - Concepts and Tools. 17(2):50-62.
Jimmy Lin, Wilbur WJ.  2009.  Modeling actions of PubMed users with n-gram language models. Information retrieval. 12(4):487-503.
Baker K, Bloodgood M, Dorr BJ, Filardo NW, Levin L, Piatko C.  2010.  A modality lexicon and its use in automatic tagging. Proceedings of the Seventh conference on International Language Resources and Evaluation (LREC’10). :1402-1407.
Baker K, Bloodgood M, Dorr BJ, Callison-Burch C, Filardo NW, Piatko C, Levin L, Miller S.  2012.  Modality and Negation in SIMT Use of Modality and Negation in Semantically-Informed Syntactic MT. Computational Linguistics. :1-48.
Liu X, Doermann D.  2008.  Mobile Retriever: Access to Digital Documents from their Physical Source. International Journal on Document Analysis and Recognition. 11(1):19-27.
Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al..  2017.  The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El-Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC Genomics. 8(1):181-181.
Jimmy Lin, Demner-Fushman D.  2006.  Methods for automatically evaluating answers to complex questions. Information Retrieval. 9(5):565-587.
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental Microbiology. 5(7):599-606.
Licamele L, Getoor L.  2011.  A method for the detection of meaningful and reproducible group signatures from gene expression profiles. Journal of Bioinformatics and Computational Biology. 9(3):431-451.
Liu B, Pop M.  2011.  MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC proceedings. 5(Suppl 2)
Lee C H, Varshney A, Jacobs DW.  2005.  Mesh saliency. ACM transactions on graphics. 24(3):659-666.
La RJ, Shayman MA, Bhattacharjee B.  2006.  Measurement-based optimal routing on overlay architectures for unicast sessions. Computer Networks. 50(12):1938-1951.
Wan L-B, Pan H, Hannenhalli S, Cheng Y, Ma J, Fedoriw A, Lobanenkov V, Latham KE, Schultz RM, Bartolomei MS.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. Development. 135(16):2729-2738.
Wan L-B, Pan H, Hannenhalli S, Cheng Y, Ma J, Fedoriw A, Lobanenkov V, Latham KE, Schultz RM, Bartolomei MS.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. Development. 135(16):2729-2738.
Druin A, Jaeger PT, Golbeck J, Fleischmann KR, Jimmy Lin, Qu Y, Wang P, Xie B.  2009.  The Maryland Modular Method: An Approach to Doctoral Education in Information Studies. Journal of education for library and information science. 50(4):293-301.
Meng HM, Chen B, Khudanpur S, Levow G-A, Lo W-K, Oard D, Schone P, Tang K, Wang H-M, Wang J.  2004.  Mandarin-English Information (MEI): investigating translingual speech retrieval. Computer Speech & Language. 18(2):163-179.
Meng HM, Chen B, Khudanpur S, Levow G-A, Lo W-K, Oard D, Schone P, Tang K, Wang H-M, Wang J.  2004.  Mandarin-English Information (MEI): investigating translingual speech retrieval. Computer Speech & Language. 18(2):163-179.
He D, Oard D, Wang J, Luo J, Demner-Fushman D, Darwish K, Resnik P, Khudanpur S, Nossal M, Subotin M et al..  2003.  Making miracles: Interactive translingual search for cebuano and hindi. ACM Transactions on Asian Language Information Processing (TALIP). 2(3):219-244.
Zheng Y, Li H, Doermann D.  2004.  Machine printed text and handwriting identification in noisy document images. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 26(3):337-353.
Bhattacharyya SS, Lee EA.  1994.  Looped schedules for dataflow descriptions of multirate signal processing algorithms. Formal Methods in System Design. 5(3):183-205.

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