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Kaboré S, Cecchi P, Mosser T, Toubiana M, Traoré O, Ouattara AS, Traoré AS, Barro N, Colwell RR, Monfort P.  2018.  Occurrence of Vibrio cholerae in water reservoirs of Burkina Faso. Research in Microbiology. 169(1):1-10.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)
Florczyk SJ, Simon M, Juba D, P Pine S, Sarkar S, Chen D, Baker PJ, Bodhak S, Cardone A, Brady M et al..  2016.  3D Cellular Morphotyping of Scaffold Niches. 2016 32nd Southern Biomedical Engineering Conference (SBEC).
Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N et al..  2016.  Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak. BMC Microbiology.
Bajcsy P, Cardone A, Chalfoun J, Halter M, Juba D, Kociolek M, Majurski M, Peskin A, Simon C, Simon M et al..  2015.  Survey statistics of automated segmentations applied to optical imaging of mammalian cells. BMC bioinformatics. 16:1.
Alam M, Rashed SM, Bin Mannan S, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JLuis, Navarro A, Watanabe H et al..  2014.  Occurrence in Mexico, 1998–2008, of Vibrio cholerae CTX + El Tor carrying an additional truncated CTX prophage. Proceedings of the National Academy of Sciences. 111(27):9917-9922.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Froehlich J, Findlater L, Ostergren M, Ramanathan S, Peterson J, Wragg I, Larson E, Fu F, Bai M, Patel S.  2012.  The design and evaluation of prototype eco-feedback displays for fixture-level water usage data. :2367-2376.
Goodrich MT, Papamanthou C, Nguyen D, Tamassia R, Lopes CVideira, Ohrimenko O, Triandopoulos N.  2012.  Efficient Verification of Web-content Searching Through Authenticated Web Crawlers. Proc. VLDB Endow.. 5(10):920-931.
Ture F, Oard D, Resnik P.  2012.  Encouraging consistent translation choices. Proceedings of the 2012 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies. :417–426.
Del Canto F, Botkin DJ, Valenzuela P, Popov V, Ruiz-Perez F, Nataro JP, Levine MM, Stine OC, Pop M, Torres AG et al..  2012.  Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli. Infection and immunity. 80(8):2791-2801.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Nahar S, Sultana M, Naser NM, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, Sack BR et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260
Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS et al..  2012.  Structure, function and diversity of the healthy human microbiome. Nature. 486:207-214.
Goodrich MT, Nguyen D, Ohrimenko O, Papamanthou C, Tamassia R, Triandopoulos N, Lopes CVideira.  2012.  Verifying Search Results Over Web Collections. arXiv:1204.5446 [cs].
Oh S, Hoogs A, Perera A, Cuntoor N, Chen C-C, Lee J T, Mukherjee S, Aggarwal JK, Lee H, Davis LS et al..  2011.  AVSS 2011 demo session: A large-scale benchmark dataset for event recognition in surveillance video. Advanced Video and Signal-Based Surveillance (AVSS), 2011 8th IEEE International Conference on. :527-528.
Anand P, King J, Boyd-Graber J, Wagner E, Martell C, Oard D, Resnik P.  2011.  Believe Me—We Can Do This! Annotating Persuasive Acts in Blog Text. Workshops at the Twenty-Fifth AAAI Conference on Artificial Intelligence.
Farrell R, Oza O, Zhang N, Morariu VI, Darrell T, Davis LS.  2011.  Birdlets: Subordinate categorization using volumetric primitives and pose-normalized appearance. Computer Vision (ICCV), 2011 IEEE International Conference on. :161-168.
Winternitz LB, Nicholls SO, Tits Aé, O'Leary DP.  2011.  A Constraint-Reduced Variant of Mehrotra's Predictor-Corrector Algorithm. Computational Optimization and Applications.
Lee W, Dagon D, Giffin J, Feamster N, Ollman G, Westby J, Wesson R, Vixie P.  2011.  Countering Botnets: Anomaly-Based Detection, Comprehensive Analysis, and Efficient Mitigation.
McNamee P, Mayfield J, Lawrie D, Oard D, Doermann D.  2011.  Cross Language Entity Linking. IJCNLP: International Joint Conference on Natural Language Processing.
McNamee P, Mayfield J, Oard D, Doermann D, Xu T, Wu K.  2011.  Cross-Language Entity Linking in Maryland during a Hurricane. TAC.
Chung JM, Chung M, O'Leary DP.  2011.  Designing Optimal Spectral Filters for Inverse Problems. SIAM Journal on Scientific Computing. 33(6)
Fang H-ren, O'Leary DP.  2011.  Euclidean distance matrix completion problems. Optimization Methods and Software. :1-23.
Berlin K, O'Leary DP, Fushman D.  2011.  Fast approximations of the rotational diffusion tensor and their application to structural assembly of molecular complexes. Proteins: Structure, Function, and Bioinformatics. 79(7):2268-2281.