Publications

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Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB.  2010.  Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.. 20(11):1574-1581.
Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S.  2011.  Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol Evol. 28(9):2615-2627.
Vishkin U, Wigderson A.  1983.  Trade-offs between depth and width in parallel computation. Foundations of Computer Science, 1983., 24th Annual Symposium on. :146-153.
Vishkin U.  1993.  A case for the PRAM as a standard programmer's model. Parallel Architectures and their Efficient Use. :11-19.
Vishkin D, Vishkin U.  2000.  Experiments with list ranking for explicit multi-threaded (XMT) instruction parallelism. J. Exp. Algorithmics. 5
Vishkin U.  1985.  On efficient parallel strong orientation. Information Processing Letters. 20(5):235-240.
Vishkin U.  2009.  Optical interconnect structure in a computer system and method of transporting data between processing elements and memory through the optical interconnect structure. 10/529,310(7505822)
Vishkin U.  1984.  Randomized speed-ups in parallel computation. Proceedings of the sixteenth annual ACM symposium on Theory of computing. :230-239.
Vishkin U, Smolyaninov I, Davis C.  2007.  Plasmonics and the parallel programming problem. Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series. 6477:19-19.
Vishkin U.  2003.  Prefix sums and an application thereof. : 09/224,104(6542918)
[Anonymous].  1994.  Developing a computer science agenda for high-performance computing.
Vishkin U.  2008.  Toward Realizing a PRAM-on-a-Chip Vision. Lecture Notes in Computer Science. 4854:5-6.
Vishkin U.  1988.  PRAM algorithms: teach and preach. collection of position papers, IBM-NSF Workshop on$\textbackslashbackslash$ Opportunities and Constraints of Parallel Computing", IBM Almaden.
Vishkin U.  1993.  Advanced parallel prefix-sums, list ranking and connectivity. Synthesis of Parallel Algorithms. :215-257.
Vishkin U, Nuzman JF.  2004.  Circuit architecture for reduced-synchrony on-chip interconnect. 10/166,008(6768336)
Vishkin U.  2010.  Computer Memory Architecture for Hybrid Serial and Parallel Computing Systems. 12/721,252
Vishkin U.  1992.  Methods in parallel algorithmcs. Mathematical Foundations of Computer Science 1992. :81-81.
Vishkin U.  1995.  On a Technique for Parsing a String (Invited Lecture). Lecture Notes in Computer Science. 937:386-386.
Vishkin U.  2009.  Spawn-join instruction set architecture for providing explicit multithreading. 10/236,934(7523293)
Vishkin U.  1984.  An optimal parallel connectivity algorithm* 1. Discrete applied mathematics. 9(2):197-207.
Vishkin U, Caragea GC, Lee B.  2007.  Models for advancing PRAM and other algorithms into parallel programs for a PRAM-On-Chip platform. IN HANDBOOK OF PARALLEL COMPUTING: MODELS, ALGORITHMS AND APPLICATIONS, EDITORS.
Vishkin U, Caragea GC, Lee B.  2006.  Models for Advancing PRAM and Other Algorithms into Parallel Programs for a PRAM-On-Chip Platform. Technical Reports from UMIACS, UMIACS-UMIACS-TR-2006-21.
Vishkin U.  1987.  Randomized parallel speedups for list ranking* 1. Journal of Parallel and Distributed Computing. 4(3):319-333.
Vishkin U.  1983.  Efficient distributed orientation algorithm.. IEEE TRANS. INFO. THEORY.. 29(4):624-628.
Vishkin U, Smolyaninov I.  2004.  Bending light for multi-chip virtual PRAMs? Proc. 3rd Workshop on Non-Slicon Computation, held in conjunction with the 31st International Symposium on Computer Architecture (ISCA 2004). :19-23.

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