Publications

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Journal Articles
Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)
Juba D, Cardone A, Ip C Y, Simon Jr CG, K Tison C, Kumar G, Brady M, Varshney A.  2013.  Parallel geometric classification of stem cells by their three-dimensional morphology. Computational Science & Discovery. 6(1):015007.
Apostolico A, Iliopoulos C, Landau GM, Schieber B, Vishkin U.  1988.  Parallel construction of a suffix tree with applications. Algorithmica. 3(1):347-365.
Miller BP, Callaghan MD, Cargille JM, Hollingsworth J, Irvin RB, Karavanic KL, Kunchithapadam K, Newhall T.  1995.  The Paradyn parallel performance measurement tool. Computer. 28(11):37-46.
Islam MS, Tasmin R, s l a m Khan SI, Bakht HBM, a y a t Mahmood ZH, i a u r Rahman MZ, m i n Bhuiyan NA, Nishibuchi M, a l a k r i s h Nair GB, r a d l e y Sack RB et al..  2004.  Pandemic strains of O3:K6 Vibrio parahaemolyticus in the aquatic environment of Bangladesh. Canadian Journal of Microbiology. 50(10):827-834.
Cleaveland R, Iyer P, Yankelevich D.  1995.  Optimality in abstractions of model checking. Static Analysis. :51-63.
Katz B, Felshin S, Yuret D, Ibrahim A, Jimmy Lin, Marton G, Jerome McFarland A, Temelkuran B.  2002.  Omnibase: Uniform access to heterogeneous data for question answering. Natural Language Processing and Information Systems. :230-234.
Steinherz T, Doermann D, Rivlin E, Intrator N.  2009.  Off-Line Loop Investigation for Handwriting Analysis. IEEETransactions on Pattern Analysis and Machine Intelligence. 31(2):193-209.
Alam M, Rashed SM, Bin Mannan S, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JLuis, Navarro A, Watanabe H et al..  2014.  Occurrence in Mexico, 1998–2008, of Vibrio cholerae CTX + El Tor carrying an additional truncated CTX prophage. Proceedings of the National Academy of Sciences. 111(27):9917-9922.
Chekuri C, Gal A, Im S, Khuller S, Li J, McCutchen R, Moseley B, Raschid L.  2011.  New models and algorithms for throughput maximization in broadcast scheduling. Approximation and Online Algorithms. :71-82.
Rahaman M.Habibur, Islam T, Colwell RR, Alam M.  2015.  Molecular tools in understanding the evolution of Vibrio cholerae. Frontiers in Microbiology. (e0120311154e00398-13822020380817190)
Irizarry RA, Corrada Bravo H.  2009.  Model-based quality assessment and base-calling for second-generation sequencing data. Johns Hopkins University, Dept. of Biostatistics Working Papers. :184-184.
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
Al-Hebshi NNoor, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hassan NA, Colwell RR, Ismail A.  2019.  Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children. Journal of Oral Microbiology. (118):1557986.
Iwerks GS, Samet H, Smith KP.  2006.  Maintenance of K-nn and spatial join queries on continuously moving points. ACM Trans. Database Syst.. 31(2):485-536.
Bel N, Dorr BJ, Hovy E, Knight K, Iida H, Boitet C, Maegaard B, Wilks Y.  1999.  Machine Translation. Multilingual Information Management: Current Levels and Future Abilities. :18-18.
Ilghami O, Nau DS, Muñoz-Avila H, Aha DW.  2005.  Learning preconditions for planning from plan traces and HTN structure. Computational Intelligence. 21(4):388-413.
Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA et al..  2012.  Vibrio cholerae in a historically cholera-free country. Environmental Microbiology Reports. (4):381-389.
Alam M, Islam TM, Rashed S M, Johura F-T, Bhuiyan NA, Delgado G, Morales R, Mendez J L, Navarro A, Watanabe H et al..  2012.  Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical Microbiology.
Ishita E, Oard D, Fleischmann KR, Cheng AS, Templeton TC.  2010.  Investigating multi-label classification for human values. Proceedings of the American Society for Information Science and Technology. 47(1):1-4.
Shneiderman B, Lazar J, IVORY M.  2003.  INTRODUCTION TO VOLUME 1, ISSUE 3: WEB NAVIGATION. IT&SOCIETY. 1(3)
Wu H, Irizarry RA, Corrada Bravo H.  2010.  Intensity normalization improves color calling in SOLiD sequencing. Nat MethNat Meth. 7(5):336-337.
Balch T, Dellaert F., Feldman A., Guillory A., Isbell C.L., Khan Z, Pratt S.C., Stein A.N., Wilde H..  2006.  How Multirobot Systems Research will Accelerate our Understanding of Social Animal Behavior. Proceedings of the IEEE. 94(7):1445-1463.
Zo YG, Rivera ING, Russek-Cohen E, Islam MS, Siddique AK, Yunus M, Sack RB, Huq A, Colwell RR.  2002.  Genomic profiles of clinical and environmental isolates of Vibrio cholerae O1 in cholera-endemic areas of Bangladesh. Proceedings of the National Academy of Sciences. 99(19):12409-12409.
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.

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