Publications

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2005
Eaton C, Plaisant C, Drizd T.  2005.  Visualizing Missing Data: Graph Interpretation User Study. Human-Computer Interaction - INTERACT 2005. 3585:861-872.
Resnik P, Elkiss A, Lau E, Taylor H.  2005.  The web in theoretical linguistics research: Two case studies using the Linguist’s Search Engine. 31st Meeting of the Berkeley Linguistics Society. :265-276.
Egerstedt M., Balch T, Dellaert F., Delmotte F., Khan Z.  2005.  What Are the Ants Doing? Vision-Based Tracking and Reconstruction of Control Programs Proceedings of the 2005 IEEE International Conference on Robotics and Automation, 2005. ICRA 2005. :4182-4187.
2006
Wu CT, Elman H.  2006.  Analysis and comparison of geometric and algebraic multigrid for convection-diffusion equations. ANALYSIS. 28(6):2208-2228.
Elman H, Howle VE, Shadid J, Shuttleworth R, Tuminaro R.  2006.  Block preconditioners based on approximate commutators. SIAM Journal on Scientific Computing. 27(5):1651-1668.
Evans P, Donahue G, Hannenhalli S.  2006.  Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205:186-199.
Evans P, Donahue G, Hannenhalli S.  2006.  Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205:186-199.
Shneiderman B, Fischer G, Czerwinski M, Resnick M, Myers B, Candy L, Edmonds E, Eisenberg M, Giaccardi E, Hewett T et al..  2006.  Creativity Support Tools: Report From a U.S. National Science Foundation Sponsored Workshop. International Journal of Human-Computer Interaction. 20(2):61-77.
Shneiderman B, Fischer G, Czerwinski M, Resnick M, Myers B, Candy L, Edmonds E, Eisenberg M, Giaccardi E, Hewett T et al..  2006.  Creativity Support Tools: Report From a U.S. National Science Foundation Sponsored Workshop. International Journal of Human-Computer Interaction. 20(2):61-77.
Everett L, Wang L-S, Hannenhalli S.  2006.  Dense Subgraph Computation Via Stochastic Search: Application to Detect Transcriptional Modules. BioinformaticsBioinformatics. 22(14):e117-e123-e117-e123.
Prasad VSN, Davis LS, Tran S D, Elgammal A.  2006.  Edge affinity for pose-contour matching. Computer Vision and Image Understanding. 104(1):36-47.
Bringaud F, Ghedin E, Blandin G, Bartholomeu DC, Caler E, Levin MJ, Baltz T, El-Sayed NM.  2006.  Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Molecular and Biochemical Parasitology. 145(2):158-170.
Elman H, Ramage A.  2006.  Fourier analysis of multigrid for a model two-dimensional convection-diffusion equation. BIT Numerical Mathematics. 46(2):283-306.
Le Moigne J, Cole-Rhodes A, Eastman R, Jain P, Joshua A, Memarsadeghi N, Mount D, Netanyahu N, Morisette J, Uko-Ozoro E.  2006.  Image Registration and Fusion Studies for the Integration of Multiple Remote Sensing Data. Acoustics, Speech and Signal Processing, 2006. ICASSP 2006 Proceedings. 2006 IEEE International Conference on. 5:V-V.
Eckman BA, Gaasterland T, Lacroix Z, Raschid L, Snyder B, Vidal ME.  2006.  Implementing a bioinformatics pipeline (bip) on a mediator platform: Comparing cost and quality of alternate choices. Data Engineering Workshops, 2006. Proceedings. 22nd International Conference on. :67-67.
Wang L-S, Jensen S, Hannenhalli S.  2006.  An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics. 4023:225-234.
Eaton E, desJardins M.  2006.  Knowledge transfer with a multiresolution ensemble of classifiers. ICML Workshop on Structural Knowledge Transfer for Machine Learning.
desJardins M, Eaton E, Wagstaff KL.  2006.  Learning user preferences for sets of objects. Proceedings of the 23rd international conference on Machine learning. :273-280.
Erickson J, Har-Peled S, Mount D.  2006.  On the Least Median Square Problem. Discrete & Computational Geometry. 36(4):593-607.
Gill SR, Pop M, DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE.  2006.  Metagenomic Analysis of the Human Distal Gut Microbiome. Science. 312(5778):1355-1359.
Elsayed T, Oard D.  2006.  Modeling identity in archival collections of email: A preliminary study. Proceedings of the 2006 Conference on Email and Anti-Spam (CEAS 06). :95-103.
Baida RCP, Santos MRM, Carmo MS, Yoshida N, Ferreira D, Ferreira A T, El Sayed NM, Andersson B, da Silveira J F.  2006.  Molecular Characterization of Serine-, Alanine-, and Proline-Rich Proteins of Trypanosoma cruzi and Their Possible Role in Host Cell Infection. Infect. Immun.. 74(3):1537-1546.
Bakay M, Wang Z, Melcon G, Schiltz L, Xuan J, Zhao P, Sartorelli V, Seo J, Pegoraro E, Angelini C et al..  2006.  Nuclear Envelope Dystrophies Show a Transcriptional Fingerprint Suggesting Disruption of Rb–MyoD Pathways in Muscle Regeneration. BrainBrain. 129(4):996-1013.
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al..  2006.  Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection. PLoS PathogPLoS Pathog. 2(6):e60-e60.
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al..  2006.  Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection. PLoS PathogPLoS Pathog. 2(6):e60-e60.

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