Publications

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Journal Articles
Stantchev G, Juba D, Dorland W, Varshney A.  2007.  Plasma Turbulence Simulation and Visualization on Graphics Processors: Efficient Parallel Computing on the Desktop. Bulletin of the American Physical Society. Volume 52, Number 11
Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
Basri R, Jacobs DW, Kemelmacher I.  2007.  Photometric stereo with general, unknown lighting. International Journal of Computer Vision. 72(3):239-257.
JaJa JF.  2000.  A perspective on Quicksort. Computing in Science Engineering. 2(1):43-49.
Liu Z, Jacobs DW, Basri R.  2000.  Perceptual Completion Behind Occluders: The Role of Convexity. Perceptual Organization for Artificial Vision Systems. :73-90.
Myers KL, Tyson WM, Wolverton MJ, Jarvis PA, Lee TJ, desJardins M.  2002.  PASSAT: A user-centric planning framework. Proceedings of the 3rd International NASA Workshop on Planning and Scheduling for Space.
Juba D, Varshney A.  2008.  Parallel, stochastic measurement of molecular surface area. Journal of Molecular Graphics and Modelling. 27(1):82-87.
Juba D, Cardone A, Ip C Y, Simon Jr CG, K Tison C, Kumar G, Brady M, Varshney A.  2013.  Parallel geometric classification of stem cells by their three-dimensional morphology. Computational Science & Discovery. 6(1):015007.
JaJa JF.  1991.  Parallel algorithms for VLSI routing. Integration, the VLSI Journal. 12(3):305-320.
JaJa JF, Kosaraju SR.  1988.  Parallel algorithms for planar graph isomorphism and related problems. Circuits and Systems, IEEE Transactions on. 35(3):304-311.
Bader DA, JaJa JF.  1995.  Parallel algorithms for image histogramming and connected components with an experimental study (extended abstract). ACM SIGPLAN Notices. 30(8):123-133.
Bader DA, JaJa JF, Harwood D, Davis LS.  1996.  Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study. The Journal of Supercomputing. 10(2):141-168.
JaJa JF, Chang S-C.  1991.  Parallel Algorithms for Channel Routing in the Knock-Knee Model. SIAM Journal on Computing. 20(2):228-245.
Bhattacharyya SS, Eker J, Janneck JW, Lucarz C, Mattavelli M, Raulet M.  2011.  Overview of the MPEG Reconfigurable Video Coding Framework. Journal of Signal Processing Systems. 63(2):251-263.
J. Johnson I, Labich N, Might M, Van Horn D.  2013.  Optimizing Abstract Abstract Machines. arXiv:1211.3722 [cs].
Wei Z, JaJa JF.  2012.  An Optimized High-Throughput Strategy for Constructing Inverted Files. Parallel and Distributed Systems, IEEE Transactions on. PP(99):1-1.
JaJa JF, Ryu KW.  1996.  An optimal randomized parallel algorithm for the single function coarsest partition problem. PPL-Parallel Processing Letters. 6(2):187-194.
Shi Q, JaJa JF.  2005.  Optimal and near-optimal algorithms for generalized intersection reporting on pointer machines. Information Processing Letters. 95(3):382-388.
JaJa JF, Ryu KW.  1993.  Optimal algorithms on the pipelined hypercube and related networks. Parallel and Distributed Systems, IEEE Transactions on. 4(5):582-591.
Wu SA, JaJa JF.  1991.  Optimal algorithms for adjacent side routing. Algorithmica. 6(1):565-578.
Acharya T, JaJa JF.  1996.  An on-line variable-length binary encoding of text. Information Sciences. 94(1–4):1-22.
Jeong IR, Katz J, Lee DH.  2004.  One-round protocols for two-party authenticated key exchange. Applied Cryptography and Network Security. :220-232.
Katz B, Felshin S, Yuret D, Ibrahim A, Jimmy Lin, Marton G, Jerome McFarland A, Temelkuran B.  2002.  Omnibase: Uniform access to heterogeneous data for question answering. Natural Language Processing and Information Systems. :230-234.

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