Publications

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Journal Articles
Ayan NF, Dorr BJ.  2002.  Generating A Parsing Lexicon from an LCS-Based Lexicon. LREC 2002 Workshop Proceedings: Linguistic Knowledge Acquisition and Representation: Bootstrapping Annotated Language Data.
Dewey FE, Perez MV, Wheeler MT, Watt C, Spin J, Langfelder P, Horvath S, Hannenhalli S, Cappola TP, Ashley EA.  2011.  Gene Coexpression Network Topology of Cardiac Development, Hypertrophy, and FailureClinical Perspective. Circulation: Cardiovascular GeneticsCirc Cardiovasc Genet. 4(1):26-35.
Zhang Y, Rath N, Hannenhalli S, Wang Z, Cappola T, Kimura S, Atochina-Vasserman E, Lu M M, Beers MF, Morrisey EE.  2007.  GATA and Nkx factors synergistically regulate tissue-specific gene expression and development in vivo. Development. 134(1):189-198.
Cukier M, Arlat J, Powell D.  1998.  Frequentist and Bayesian Coverage Estimations for Stratified Fault-Injection. DEPENDABLE COMPUTING AND FAULT TOLERANT SYSTEMS. 11:43-62.
Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH.  2012.  A framework for human microbiome research. Nature. 486:215-221.
Foster JS, Terauchi T, Aiken A.  2002.  Flow-sensitive type qualifiers. ACM SIGPLAN Notices. 37(5):1-12.
Foster JS, Johnson R, Kodumal J, Aiken A.  2006.  Flow-insensitive type qualifiers. ACM Transactions on Programming Languages and Systems (TOPLAS). 28(6):1035-1087.
Haibin G A, Agarwal G, Ling H, Jacobs DW, Shirdhonkar S, Kress JW, Russell R, Belhumeur P, Dixit A, Feiner S et al..  2006.  First Steps Toward an Electronic Field Guide for Plants. Taxon. 55:597-610.
Atallah M, Vishkin U.  1984.  Finding Euler tours in parallel* 1. Journal of Computer and System Sciences. 29(3):330-337.
Anwer MB, Feamster N.  2009.  A Fast, Virtualized Data Plane for the NetFPGA. NetFPGA Developers Workshop, Stanford, California. :90-94.
Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Fast track article: Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive Mob. Comput.. 8(1):82-102.
Fermüller C, Pless R, Aloimonos Y.  1997.  Families of Stationary Patterns Producing Illusory Movement: Insights into the Visual System. Proceedings of the Royal Society of London. Series B: Biological SciencesProc. R. Soc. Lond. B. 264(1383):795-806.
Zhou SK, Aggarwal G, Chellappa R, Jacobs DW.  2007.  Face and Gesture Recognition-Appearance Characterization of Linear Lambertian Objects, Generalized Photometric Stereo, and Illumination-Invariant Face Recognition. IEEE Transactions on Pattern Analysis and Machine Intelligence. 29(2):230-245.
Brown DG, Robinson DT, An L, Nassauer JI, Zellner M, Rand W, Riolo R, Page SE, Low B, Wang Z.  2008.  Exurbia from the bottom-up: Confronting empirical challenges to characterizing a complex system. Geoforum. 39(2):805-818.
Lin CK, Goldsman N, Chang CH, Mayergoyz ID, Aronowitz S, Dong J, Belova N.  1998.  Extension of Spherical Harmonic Method to RF Transient Regime. Simulation of semiconductor processes and devices 1998: SISPAD 98. :42-42.
Shmueli G, Jank W, Aris A, Plaisant C, Shneiderman B.  2006.  Exploring auction databases through interactive visualization. Decision Support Systems. 42(3):1521-1538.
Angelopoulos N, Cussens J, De Raedt L, Dietterich T, Getoor L, Muggleton SH.  2006.  Exploiting independence for branch operations in Bayesian learning of C&RTs. Probabilistic, Logical and Relational Learning-Towards a Synthesis.
Hochstein L, Nakamura T, Basili VR, Asgari S, Zelkowitz MV, Hollingsworth J, Shull F, Carver J, Voelp M, Zazworka N et al..  2006.  Experiments to understand HPC time to development. CTWatch Quarterly.
Lindvall M, Rus I, Donzelli P, Memon AM, Zelkowitz MV, Betin-Can A, Bultan T, Ackermann C, Anders B, Asgari S et al..  2007.  Experimenting with software testbeds for evaluating new technologies. Empirical Software Engineering. 12(4):417-444.
Lindvall M, Rus I, Donzelli P, Memon AM, Zelkowitz MV, Betin-Can A, Bultan T, Ackermann C, Anders B, Asgari S et al..  2007.  Experimenting with software testbeds for evaluating new technologies. Empirical Software Engineering. 12(4):417-444.
Lindvall M, Rus I, Donzelli P, Memon AM, Zelkowitz MV, Betin-Can A, Bultan T, Ackermann C, Anders B, Asgari S et al..  2007.  Experimenting with software testbeds for evaluating new technologies. Empirical Software Engineering. 12(4):417-444.
Alborzi H, Samet H.  2007.  Execution time analysis of a top-down R-tree construction algorithm. Information Processing Letters. 101(1):6-12.
Merkle D, Middendorf M, Scheidler A, Avigad G, Moshaiov A, Brauner N, Parsopoulos KE, Vrahatis MN, Rand W, Riolo R.  2005.  EvoSTOC Contributions. Applications of evolutionary computing: EvoWorkshops 2005, EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoMUSART, and EvoSTOC.
Kim H, Benson T, Akella A, Feamster N.  2011.  The Evolution of Network Configuration: A Tale of Two Campuses. Networks. 7:18-18.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.

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