Publications

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Journal Articles
Khan Z, Bloom JS, Amini S, Singh M, Perlman DH, Caudy AA, Kruglyak L.  2012.  Quantitative measurement of allele‐specific protein expression in a diploid yeast hybrid by LC‐MS. Molecular Systems Biology. 8(1)
O'Leary DP, Bullock SS.  2005.  QR Factorizations Using a Restricted Set of Rotations. Electronic Transactions on Numerical Analysis. 21:20-27.
Banerjee S, Mount D, Rosenfeld A.  1991.  Pyramid computation of neighbor distance statistics in dot patterns. CVGIP: Graphical Models and Image Processing. 53(4):373-381.
Brooks R, Sheppard S, Shneiderman B.  1985.  The Psychology of Program Documentation. Conference on Software Maintenance, 1985, Sheraton Inn Washington-Northwest, November 11-13, 1985. :191-191.
Bernstein LB, Mount SM, Weiner AM.  1983.  Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites. CellCell. 32(2):461-472.
Sane N, Ford J, Harris AI, Bhattacharyya SS.  2012.  Prototyping scalable digital signal processing systems for radio astronomy using dataflow models. Radio Science. 47(3):n/a-n/a.
Khan Z, Bloom JS, Garcia BA, Singh M, Kruglyak L.  2009.  Protein quantification across hundreds of experimental conditions. Proceedings of the National Academy of Sciences. 106(37):15544-15548.
Basu MK, Selengut JD, Haft DH.  2011.  ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.. BMC Bioinformatics. 12:434.
Basri R, Jacobs DW.  2001.  Projective alignment with regions. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 23(5):519-527.
Balkan AO, Vishkin U.  2006.  Programmer's Manual for XMTC Language, XMTC Compiler and XMT Simulator. Technical Reports from UMIACS, UMIACS-TR-2005-45.
Bail WG, Zelkowitz MV.  1988.  Program complexity using Hierarchical Abstract Computers. Computer Languages. 13(3–4):109-123.
Beynon M, Chang C, Catalyurek U, Kurc T, Sussman A, Andrade H, Ferreira R, Saltz J.  2002.  Processing large-scale multi-dimensional data in parallel and distributed environments. Parallel Computing. 28(5):827-859.
Zellner ML, Riolo RL, Rand W, Brown DG, Page SE, Fernandez LE.  2010.  The problem with zoning: nonlinear effects of interactions between location preferences and externalities on land use and utility. Environment and Planning B: Planning and Design. 37(3):408-428.
Bröcheler M, Mihalkova L, Getoor L.  2010.  Probabilistic similarity logic. Proceedings of the Conference on Uncertainty in Artificial Intelligence.
Hua S, Qu G, Bhattacharyya SS.  2007.  Probabilistic design of multimedia embedded systems. ACM Transactions on Embedded Computing Systems (TECS). 6(3):15–es-15–es.
Haley BJ, Grim CJ, Hasan NA, Taviani E, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter CJ, Han CS et al..  2010.  The pre‐seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir. Environmental Microbiology Reports. 2(1):208-216.
Haley BJ, Grim CJ, Hasan NA, Taviani E, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter CJ, Han CS et al..  2010.  The pre‐seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir. Environmental Microbiology Reports. 2(1):208-216.
Bhattacharya R, Chatterjee S, Bhattacharyya SS.  2012.  Preparation and probing of coherent vibrational wave packets in the ground electronic state of HD^{+}. Physical Review A. 85(3)
Bhattacharya R, Chatterjee S, Bhattacharyya SS.  2012.  Preparation and probing of coherent vibrational wave packets in the ground electronic state of HD^{+}. Physical Review A. 85(3)
Constantin de Magny G, Long W, Brown CW, Hood RR, Huq A, Murtugudde R, Colwell RR.  2009.  Predicting the distribution of Vibrio spp. in the Chesapeake Bay: a Vibrio cholerae case study. EcoHealth. 6(3):378-389.
Bader DA, Helman DR, JaJa JF.  1996.  Practical parallel algorithms for personalized communication and integer sorting. Journal of Experimental Algorithmics (JEA). 1
Bhat G, Cleaveland R, L\üttgen G.  1999.  A practical approach to implementing real-time semantics. Annals of Software Engineering. 7(1):127-155.
Khan Z, Bloom JS, Kruglyak L, Singh M.  2009.  A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. Bioinformatics. 25(13):1609-1616.
Bhattacharjee B, Calvert K, Griffioen J, Spring N, Sterbenz JPG.  2006.  Postmodern internetwork architecture. ITTC-FY2006-TR-45030-01, Information and Telecommunication Center, The University of Kansas.
Bienkowski MA, desJardins M.  1994.  Planning-based integrated decision support systems. Artificial Intelligence Planning Systems: Proceedings of the Second International Conference (AIPS-94). :196-201.

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