Publications

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Dumitras T, Efstathopoulos P..  2012.  The Provenance of WINE. Dependable Computing Conference (EDCC), 2012 Ninth European. :126-131.
Everett L, Vo A, Hannenhalli S.  2009.  PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids ResearchNucleic Acids Research. 37(Database):D66-D71-D66-D71.
Earl C, Might M, Van Horn D.  2010.  Pushdown Control-Flow Analysis of Higher-Order Programs. arXiv:1007.4268 [cs].
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Eckman B, Deutsch K, Janer M, Lacroix Z, Raschid L.  2003.  A query language to support scientific discovery. Proc. 2nd IEEE International Computer Society.
Huang Y, Katz J, Evans D.  2012.  Quid Pro Quo-tocols: Strengthening Semi-Honest Protocols with Dual Execution. IEEE Symposium on Security and Privacy.
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Esteves K, Hervio-Heath D, Mosser T, Rodier C, Tournoud M-G, Jumas-Bilak E, Colwell RR, Monfort P.  2015.  Rapid Proliferation of Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae during Freshwater Flash Floods in French Mediterranean Coastal Lagoons. Applied and Environmental Microbiology. (21):7600-7609.
Edney J, Arbaugh WA.  2003.  Real 802.11 Security: Wi-Fi Protected Access and 802.11 i, 480 pages.
Yang C, Duraiswami R, Elgammal A, Davis LS.  2004.  Real-Time Kernel-Based Tracking in Joint Feature-Spatial Spaces. Technical Reports from UMIACS.
Elgot-Drapkin JJ, Perlis D.  1990.  Reasoning situated in time I: Basic concepts. Journal of Experimental and Theoretical Artificial Intellige. 2(1):75-98.
Everett L, Hansen M, Hannenhalli S.  2010.  Regulating the Regulators: Modulators of Transcription Factor Activity. Computational Biology of Transcription Factor BindingComputational Biology of Transcription Factor Binding. 674:297-312.
Elman H.  1989.  Relaxed and stabilized incomplete factorizations for non-self-adjoint linear systems. BIT Numerical Mathematics. 29(4):890-915.
Elsayed T, Oard D, Namata G.  2008.  Resolving personal names in email using context expansion. Association for Computational Linguistics (ACL).
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al..  2006.  Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection. PLoS PathogPLoS Pathog. 2(6):e60-e60.
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al..  2006.  Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection. PLoS PathogPLoS Pathog. 2(6):e60-e60.
Nahar S, Sultana M, Naser NM, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, Sack BR et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260
Bringaud F, Ghedin E, El-Sayed NM, Papadopoulou B.  2008.  Role of transposable elements in trypanosomatids. Microbes and Infection. 10(6):575-581.
Edjlali G, Agrawal G, Sussman A, Humphries J, Saltz J.  1997.  Run-time and compiler support for programming in adaptive parallel environments. Scientific Programming. 6(2):215-227.
Ranganathan M, Acharya A, Edjlali G, Sussman A, Saltz J.  1996.  Runtime coupling of data-parallel programs. Proceedings of the 10th international conference on Supercomputing. :229-236.
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Lim S-N, Davis LS, Elgammal A.  2003.  Scalable image-based multi-camera visual surveillance system. Proceedings. IEEE Conference on Advanced Video and Signal Based Surveillance, 2003.. :205-212.
Haas BJ, Berriman M, Hirai H, Cerqueira GG, LoVerde PT, El-Sayed NM.  2007.  Schistosoma mansoni genome: Closing in on a final gene set. Experimental Parasitology. 117(3):225-228.
LoVerde PT, Hirai H, Merrick JM, Lee NH, El-Sayed NM.  2004.  Schistosoma mansoni genome project: an update. Parasitology International. 53(2):183-192.
Wu W, Niles EG, El-Sayed NM, Berriman M, LoVerde PT.  2006.  Schistosoma mansoni (Platyhelminthes, Trematoda) nuclear receptors: Sixteen new members and a novel subfamily. Gene. 366(2):303-315.
Eaton E, desJardins M, others.  2011.  Selective transfer between learning tasks using task-based boosting. Twenty-Fifth AAAI Conference on Artificial Intelligence.
Froehlich J, Everitt K, Fogarty J, Patel S, Landay J.  2009.  Sensing opportunities for personalized feedback technology to reduce consumption. Proc. CHI Workshop on Defining the Role of HCI in the Challenge of Sustainability.
El-Sayed NM, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic acids research. 31(16):4856-4856.

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