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Nguyen VA, Boyd-Graber J, Chang J, Resnik P.  Submitted.  Tree-based Label Dependency Topic Models. cs.umd.edu.
2019
Le ST, Guros NB, Bruce RC, Cardone A, Amin ND, Zhang S, Klauda J, Pant HC, Richter CA, Balijepalli A.  2019.  Quantum Capacitance-Limited MoS2 Biosensors Enable Remote Label-Free Enzyme Measurements. Nanoscale.
2018
Neogi S, Rubin L, Alam M, Harder J, Yamasaki S, Colwell RR.  2018.  Environmental and hydroclimatic factors influencing Vibrio populations in the estuarine zone of the Bengal delta. Environmental Monitoring and Assessment. (10)
Roy M, Arnaud J, Jasmin P, Hamner S, Hasan N, Colwell RR, Ford T.  2018.  A Metagenomic Approach to Evaluating Surface Water Quality in Haiti. International Journal of Environmental Research and Public Health. 1542(10):2211.
2017
Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron J-L, Huq A, Rashed S et al..  2017.  Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti. Journal of Microbiological Methods. 133:23-31.
Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron J-L, Huq A, Rashed S et al..  2017.  Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti. Journal of Microbiological Methods. 133:23-31.
Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron J-L, Huq A, Rashed S et al..  2017.  Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti. Journal of Microbiological Methods. 133:23-31.
Phelps C, Madhavan G, Rappuoli R, Colwell RR, Fineberg H.  2017.  Beyond cost-effectiveness: Using systems analysis for infectious disease preparedness. Vaccine. 35:A46-A49.
Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR et al..  2017.  Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. mBio. (4)
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.
Nasr-Azadani F, Khan R, Rahimikollu J, Unnikrishnan A, Akanda A, Alam M, Huq A, Jutla A, Colwell RR.  2017.  Hydroclimatic sustainability assessment of changing climate on cholera in the Ganges-Brahmaputra basin. Advances in Water Resources. 108:332-344.
Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq M.Mozammel, R. Sack B, Colwell RR, Huq A.  2017.  Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh. Frontiers in Microbiology.
Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al..  2017.  The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)
2016
Filho J.E.Martinelli, Lopes R.M., Rivera I.N.G., Colwell RR.  2016.  Are natural reservoirs important for cholera surveillance? The case of an outbreak in a Brazilian estuary Letters in Applied Microbiology. (3):183-188.
Vezzulli L, Grande C, Reid PC, laouët Pé, Edwards M, fle MG ö, Brettar I, Colwell RR, Pruzzo C.  2016.  Climate influence on Vibrio and associated human diseases during the past half-century in the coastal North Atlantic. Proceedings of the National Academy of Sciences. :E5062-E5071.
Rashid M-ur, Almeida M, Azman AS, Lindsay BR, Sack DA, Colwell RR, Huq A, J. Morris G, Alam M, O. Stine C.  2016.  Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1. FEMS Microbiology Letters. 36389(12):fnw116.
Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N et al..  2016.  Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak. BMC Microbiology.
Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N et al..  2016.  Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak. BMC Microbiology.
Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N et al..  2016.  Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak. BMC Microbiology.
Madhavan G, Phelps CE, Colwell RR, Rappuoli R, Fineberg HV.  2016.  In Plain View: A Transparent Systems Approach for Enhancing Health Policy Decisions. The Bridge.
Carraro N, Rivard N, Ceccarelli D, Colwell RR, Burrus V.  2016.  IncA/C Conjugative Plasmids Mobilize a New Family of Multidrug Resistance Islands in Clinical Vibrio cholerae Non-O1/Non-O139 Isolates from Haiti. mBio. (4)
Motesharrei S, Rivas J, Kalnay E, Asrar GR, Busalacchi AJ, Cahalan RF, Cane MA, Colwell RR, Feng K, Franklin RS et al..  2016.  Modeling Sustainability: Population, Inequality, Consumption, and Bidirectional Coupling of the Earth and Human Systems. National Science Review. :nww081.
Motesharrei S, Rivas J, Kalnay E, Asrar GR, Busalacchi AJ, Cahalan RF, Cane MA, Colwell RR, Feng K, Franklin RS et al..  2016.  Modeling Sustainability: Population, Inequality, Consumption, and Bidirectional Coupling of the Earth and Human Systems. National Science Review. :nww081.
Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)

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