Publications

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2004
Eubank S, Kumar AVS, Marathe MV, Srinivasan A, Wang N.  2004.  Structural and algorithmic aspects of massive social networks. Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms. :718-727.
Lacroix Z, Raschid L, Eckman BA.  2004.  Techniques for optimization of queries on integrated biological resources. Journal of bioinformatics and computational biology. 2(2):375-412.
2005
El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C et al..  2005.  Comparative Genomics of Trypanosomatid Parasitic Protozoa. Science. 309(5733):404-409.
El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C et al..  2005.  Comparative Genomics of Trypanosomatid Parasitic Protozoa. Science. 309(5733):404-409.
Elman H, Ernst OG, O’Leary DP, Stewart M.  2005.  Efficient iterative algorithms for the stochastic finite element method with application to acoustic scattering. Computer Methods in Applied Mechanics and Engineering. 194(9–11):1037-1055.
Elman H, Ernst OG, O’Leary DP, Stewart M.  2005.  Efficient iterative algorithms for the stochastic finite element method with application to acoustic scattering. Computer Methods in Applied Mechanics and Engineering. 194(9–11):1037-1055.
Hollingsworth J, Snavely A, Sbaraglia S, Ekanadham K.  2005.  EMPS: an environment for memory performance studies. Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International.
Elman H, Silvester DJ, Wathen AJ.  2005.  Finite Elements and Fast Iterative Solvers : with Applications in Incompressible Fluid Dynamics. :416.
MacLeod A, Tweedie A, McLellan S, Taylor S, Hall N, Berriman M, El-Sayed NM, Hope M, Turner CMR, Tait A.  2005.  The genetic map and comparative analysis with the physical map of Trypanosoma brucei. Nucleic acids research. 33(21):6688-6688.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science. 309(5733)
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.. 79(11):6610-6619.
El-Osery AI, Baird D, Abd-Almageed W.  2005.  A learning automata based power management for ad-hoc networks. 2005 IEEE International Conference on Systems, Man and Cybernetics. 4:3569-3573Vol.4-3569-3573Vol.4.
Resnik P, Elkiss A.  2005.  The linguist's search engine: an overview. Proceedings of the ACL 2005 on Interactive poster and demonstration sessions. :33-36.
Elman H.  2005.  Preconditioning strategies for models of incompressible flow. Journal of Scientific Computing. 25(1):347-366.
Ouhammouch M, Langham GE, Hausner W, Simpson AJ, El-Sayed NM, Geiduschek PE.  2005.  Promoter architecture and response to a positive regulator of archaeal transcription. Molecular Microbiology. 56(3):625-637.
Salzberg SL, Hotopp J CD, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC.  2005.  Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biology. 6(3):R23-R23.
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, El-Sayed NM, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non‐lethal cold shock. Environmental Microbiology. 7(6):789-797.
Odom J, Hollingsworth J, DeRose L, Ekanadham K, Sbaraglia S.  2005.  Using Dynamic Tracing Sampling to Measure Long Running Programs. Proceedings of the 2005 ACM/IEEE conference on Supercomputing. :59–-59–.
Eaton C, Plaisant C, Drizd T.  2005.  Visualizing missing data: classification and empirical study. Proceedings of INTERACT. :861-872.

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