Publications

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2013
Juba D, Cardone A, Ip C Y, Simon Jr CG, K Tison C, Kumar G, Brady M, Varshney A.  2013.  Parallel geometric classification of stem cells by their three-dimensional morphology. Computational Science & Discovery. 6(1):015007.
Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M.  2013.  Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells.. Journal of microscopy. 249(1):41-52.
Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M.  2013.  Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells.. Journal of microscopy. 249(1):41-52.
Boyd-Graber J, Glasgow K, Zajac JS.  2013.  Spoiler Alert: Machine Learning Approaches to Detect Social Media Posts with Revelatory Information.
Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.  2013.  TIGRFAMs and Genome Properties in 2013.. Nucleic Acids Res. 41(Database issue):D387-95.
Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.  2013.  TIGRFAMs and Genome Properties in 2013.. Nucleic Acids Res. 41(Database issue):D387-95.
Li-Baboud Y-S, Cardone A, Chalfoun J, Bajcsy P, Elliott J.  2013.  Understanding the impact of image quality on segmentation accuracy. SPIE Newsroom.
Bitansky N, Dachman-Soled D, Garg S, Jain A, Kalai YTauman, López-Alt A, Wichs D.  2013.  Why “Fiat-Shamir for Proofs” Lacks a Proof. Theory of Cryptography. :182-201.
2014
Kirchberger P.C, Turnsek M., Hunt D.E, Haley B.J, Colwell RR, Polz M.F, Tarr C.L, Boucher Y..  2014.  Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
Alam M, Rashed SM, Bin Mannan S, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JLuis, Navarro A, Watanabe H et al..  2014.  Occurrence in Mexico, 1998–2008, of Vibrio cholerae CTX + El Tor carrying an additional truncated CTX prophage. Proceedings of the National Academy of Sciences. 111(27):9917-9922.
Budowle B, Connell ND, Bielecka-Oder A, Colwell RR, Corbett CR, Fletcher J, Forsman M, Kadavy DR, Markotic A, Morse SA et al..  2014.  Validation of high throughput sequencing and microbial forensics applications. Investigative Genetics. 5(1):9.
Budowle B, Connell ND, Bielecka-Oder A, Colwell RR, Corbett CR, Fletcher J, Forsman M, Kadavy DR, Markotic A, Morse SA et al..  2014.  Validation of high throughput sequencing and microbial forensics applications. Investigative Genetics. 5(1):9.
D. Grimes J, Ford TE, Colwell RR, Baker-Austin C, Martinez-Urtaza J, Subramaniam A, Capone DG.  2014.  Viewing Marine Bacteria, Their Activity and Response to Environmental Drivers from Orbit. Microbial Ecology. (38):489-500.
2015
Bartholomew JC, Pearson AD, Stenseth NC, LeDuc JW, Hirschberg DL, Colwell RR.  2015.  Building Infectious Disease Research Programs to Promote Security and Enhance Collaborations with Countries of the Former Soviet Union. Frontiers in Public Health. 35361632
Hasan NA, Grim CJ, Lipp EK, Rivera ING, Chun J, Haley BJ, Taviani E, Choi SYoung, Hoq M, A. Munk C et al..  2015.  Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences. (2144666966517):E2813-E2819.
Hasan NA, Grim CJ, Lipp EK, Rivera ING, Chun J, Haley BJ, Taviani E, Choi SYoung, Hoq M, A. Munk C et al..  2015.  Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences. (2144666966517):E2813-E2819.
Cardone A, Bornstein A, Pant HC, Brady M, Sriram R, Hassan SA.  2015.  Detection and characterization of nonspecific, sparsely populated binding modes in the early stages of complexation.. J Comput Chem.
Cardone A, Bornstein A, Pant HC, Brady M, Sriram R, Hassan SA.  2015.  Detection and characterization of nonspecific, sparsely populated binding modes in the early stages of complexation.. J Comput Chem.
Hill VR, Humphrys MS, Kahler AM, Boncy J, Tarr CL, Huq A, Chen A, Katz LS, Mull BJ, Derado G et al..  2015.  Environmental Surveillance for Toxigenic Vibrio cholerae in Surface Waters of Haiti. The American Journal of Tropical Medicine and Hygiene. 92(1):118-125.
Cardone A, Brady M, Kociolek M, Bajcsy P.  2015.  Estimating Actin Fiber Orientation using Interpolation-Based Grey-Level Co-Occurrence Matrix Computation. BioImage Informatics Conference .
Cardone A, Brady M, Kociolek M, Bajcsy P.  2015.  Estimating Actin Fiber Orientation using Interpolation-Based Grey-Level Co-Occurrence Matrix Computation. BioImage Informatics Conference .
Hasan NA, Rezayat T, Blatz PJ, Choi SYoung, Griffitt KJ, Rashed SM, Huq A, Conger NG, Colwell RR, D. Grimes J.  2015.  Nontoxigenic Vibrio cholerae Non-O1/O139 Isolate from a Case of Human Gastroenteritis in the U.S. Gulf Coast. Journal of Clinical Microbiology. (1):9-14.
Jutla A, Aldaach H, Billian H, Akanda A, Huq A, Colwell RR.  2015.  Satellite Based Assessment of Hydroclimatic Conditions Related to Cholera in Zimbabwe. PLOS ONE. (9Suppl 1):e0137828.
Cardone A, Chalfoun J, Peskin A, Bajcsy P, Kociolek M, Bhadriraju K, Brady M.  2015.  Segmentation and sub-cellular feature-based analysis of microscopy images. BioImage Informatics Conference .

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