Publications

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Journal Articles
North C, Shneiderman B, Plaisant C.  1997.  Visual Information Seeking in Digital Image Libraries: The Visible Human Explorer. Information in Images.
Revelle G, Druin A, Platner M, Bederson BB, Hourcade JP, Sherman L.  2002.  A visual search tool for early elementary science students. Journal of Science Education and Technology. 11(1):49-57.
Plaisant C, Grinstein G, Scholtz J.  2009.  Visual-Analytics Evaluation. Computer Graphics and Applications, IEEE. 29(3):16-17.
Parr CS, Lee B, Campbell D, Bederson BB.  2004.  Visualizations for taxonomic and phylogenetic trees. Bioinformatics. 20(17):2997-2997.
Eaton C, Plaisant C, Drizd T.  2005.  Visualizing missing data: classification and empirical study. Proceedings of INTERACT. :861-872.
Drizd T, Eaton C, Plaisant C.  2011.  Visualizing Missing Data: Graph Interpretation User Study. IFIP Lecture Notes in Computer Science (LNCS). 3585(3585):861-872.
Caprara A, Italiano GF, Mohan G, Panconesi A, Srinivasan A.  2002.  Wavelength rerouting in optical networks, or the Venetian Routing problem. Journal of Algorithms. 45(2):93-125.
Pop M.  2012.  We are what we eat: how the diet of infants affects their gut microbiome. Genome Biology. 13(4)
Piatetsky-Shapiro G, Djeraba C, Getoor L, Grossman R, Feldman R, Zaki M.  2006.  What are the grand challenges for data mining? - KDD-2006 panel report ACM SIGKDD Explorations Newsletter. 8(2):70-77.
Perlis D.  2000.  What does it take to refer. Journal of Consciousness Studies. 7(5):67-9.
Perlis D.  2000.  What does it take to refer? a reply to Bojadziev Journal of Consciousness Studies. 7(5):67-69.
Anderson ML, Perlis D.  2009.  What puts the “meta” in metacognition? Behavioral and Brain Sciences. 32(02):138-139.
Plaisant C, Carr DA, Hasegawa H.  1992.  When an Intermediate View Matters a 2D-browser Experiment. Institute for Systems Research Technical Reports.
Nau DS, Luštrek M, Parker A, Bratko I, Gams M.  2010.  When is it better not to look ahead? Artificial Intelligence. 174(16–17):1323-1338.
Ricaldi JN, Fouts DE, Selengut JD, Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M et al..  2012.  Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.. PLoS Negl Trop Dis. 6(10):e1853.
Ricaldi JN, Fouts DE, Selengut JD, Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M et al..  2012.  Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.. PLoS Negl Trop Dis. 6(10):e1853.
Zotenko E, Mestre J, O'Leary DP, Przytycka TM.  2008.  Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality. PLoS Comput BiolPLoS Comput Biol. 4(8):e1000140-e1000140.
Papamanthou C, Paparrizos K, Samaras N, Stergiou K.  2008.  Worst case examples of an exterior point algorithm for the assignment problem. Discrete Optimization. 5(3):605-614.
Papamanthou C, Paparrizos K, Samaras N, Stergiou K.  2008.  Worst case examples of an exterior point algorithm for the assignment problem. Discrete Optimization. 5(3):605-614.
Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB.  2010.  Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.. 20(11):1574-1581.
Journals
Leddy MB, Plumlee MH, Kantor RS, Nelson KL, Miller SE, Kennedy LC, Stamps BW, Spear JR, Hasan NA, Colwell RR.  2018.  High-Throughput DNA Sequencing To Profile Microbial Water Quality Of Potable Reuse.
Magazine Articles
Pop M, Salzberg SL, Shumway M.  2002.  Genome Sequence Assembly: Algorithms and Issues. Computer. 35(7):47-54.
Madhavan G, Phelps CE, Colwell RR, Rappuoli R, Fineberg HV.  2016.  In Plain View: A Transparent Systems Approach for Enhancing Health Policy Decisions. The Bridge.
Patents
Ntoulas A, Hwang H, Getoor L, Paparizos S, Lauw H W.  2010.  Context-Aware Query Recommendations. 12/408,726
Roussopoulos N, Sismanis J, Deligiannakis A.  2006.  Dwarf cube architecture for reducing storage sizes of multidimensional data. 10/157,960(7133876)

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