Publications

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2007
Elman H, Ramage A, Silvester DJ.  2007.  IFISS: A Matlab toolbox for modelling incompressible flow. ACM Transactions on Mathematical Software. 33(2)
Wagstaff K, desJardins M, Eaton E, Montminy J.  2007.  Learning and visualizing user preferences over sets. American Association for Artificial Intelligence (AAAI).
Elman H, Howle VE, Shadid J, Silvester D, Tuminaro R.  2007.  Least squares preconditioners for stabilized discretizations of the Navier-Stokes equations. SIAM J. Sci. Comput. 30(1):290-311.
Easley GR, Patel VM, Healy Jr DM.  2007.  An M-channel directional filter bank compatible with the contourlet and shearlet frequency tiling. Proceedings of SPIE. 6701:67010C-67010C.
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El-Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC Genomics. 8(1):181-181.
El-Alfy H, Jacobs DW, Davis LS.  2007.  Multi-scale video cropping. Proceedings of the 15th international conference on Multimedia. :97-106.
Souza RT, Santos MRM, Lima FM, El-Sayed NM, Myler PJ, Ruiz JC, da Silveira J F.  2007.  New Trypanosoma cruzi Repeated Element That Shows Site Specificity for Insertion. Eukaryotic Cell. 6(7):1228-1238.
Haas BJ, Berriman M, Hirai H, Cerqueira GG, LoVerde PT, El-Sayed NM.  2007.  Schistosoma mansoni genome: Closing in on a final gene set. Experimental Parasitology. 117(3):225-228.
Elman H, Furnival D.  2007.  Solving the stochastic steady-state diffusion problem using multigrid. IMA journal of numerical analysis. 27(4):675-675.
Ramage A, Elman H.  2007.  Some observations on multigrid convergence for convection–diffusion equations. Computing and Visualization in Science. 10(1):43-56.
Eaton E, desJardins M, Stevenson J.  2007.  Using multiresolution learning for transfer in image classification. Proceedings of the 22nd national conference on Artificial intelligence - Volume 2. :1852-1853.
2006
Wu CT, Elman H.  2006.  Analysis and comparison of geometric and algebraic multigrid for convection-diffusion equations. ANALYSIS. 28(6):2208-2228.
Elman H, Howle VE, Shadid J, Shuttleworth R, Tuminaro R.  2006.  Block preconditioners based on approximate commutators. SIAM Journal on Scientific Computing. 27(5):1651-1668.
Evans P, Donahue G, Hannenhalli S.  2006.  Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205:186-199.
Evans P, Donahue G, Hannenhalli S.  2006.  Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205:186-199.
Shneiderman B, Fischer G, Czerwinski M, Resnick M, Myers B, Candy L, Edmonds E, Eisenberg M, Giaccardi E, Hewett T et al..  2006.  Creativity Support Tools: Report From a U.S. National Science Foundation Sponsored Workshop. International Journal of Human-Computer Interaction. 20(2):61-77.
Shneiderman B, Fischer G, Czerwinski M, Resnick M, Myers B, Candy L, Edmonds E, Eisenberg M, Giaccardi E, Hewett T et al..  2006.  Creativity Support Tools: Report From a U.S. National Science Foundation Sponsored Workshop. International Journal of Human-Computer Interaction. 20(2):61-77.
Everett L, Wang L-S, Hannenhalli S.  2006.  Dense Subgraph Computation Via Stochastic Search: Application to Detect Transcriptional Modules. BioinformaticsBioinformatics. 22(14):e117-e123-e117-e123.
Prasad VSN, Davis LS, Tran S D, Elgammal A.  2006.  Edge affinity for pose-contour matching. Computer Vision and Image Understanding. 104(1):36-47.
Bringaud F, Ghedin E, Blandin G, Bartholomeu DC, Caler E, Levin MJ, Baltz T, El-Sayed NM.  2006.  Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Molecular and Biochemical Parasitology. 145(2):158-170.
Elman H, Ramage A.  2006.  Fourier analysis of multigrid for a model two-dimensional convection-diffusion equation. BIT Numerical Mathematics. 46(2):283-306.
Le Moigne J, Cole-Rhodes A, Eastman R, Jain P, Joshua A, Memarsadeghi N, Mount D, Netanyahu N, Morisette J, Uko-Ozoro E.  2006.  Image Registration and Fusion Studies for the Integration of Multiple Remote Sensing Data. Acoustics, Speech and Signal Processing, 2006. ICASSP 2006 Proceedings. 2006 IEEE International Conference on. 5:V-V.
Eckman BA, Gaasterland T, Lacroix Z, Raschid L, Snyder B, Vidal ME.  2006.  Implementing a bioinformatics pipeline (bip) on a mediator platform: Comparing cost and quality of alternate choices. Data Engineering Workshops, 2006. Proceedings. 22nd International Conference on. :67-67.
Wang L-S, Jensen S, Hannenhalli S.  2006.  An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics. 4023:225-234.
Eaton E, desJardins M.  2006.  Knowledge transfer with a multiresolution ensemble of classifiers. ICML Workshop on Structural Knowledge Transfer for Machine Learning.

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