Publications

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Journal Articles
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, El-Sayed NM, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non‐lethal cold shock. Environmental Microbiology. 7(6):789-797.
Kim J-S, Nam B, Keleher P, Marsh M, Bhattacharjee B, Sussman A.  2008.  Trade-offs in matching jobs and balancing load for distributed desktop grids. Future Generation Computer Systems. 24(5):415-424.
Brough J, Schwartz M, Gupta SK, Anand D, Kavetsky R, Pettersen R.  2007.  Towards the development of a virtual environment-based training system for mechanical assembly operations. Virtual Reality. 11(4):189-206.
Feamster N, Balakrishnan H.  2003.  Towards a logic for wide-area Internet routing. SIGCOMM Comput. Commun. Rev.. 33(4):289-300.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Haas SW, Denn S, Locke D, Shneiderman B, Brown L.  2006.  Toward an enriched (and revitalized) sense of help: Summary of an ASIS&T 2005 panel session. Bulletin of the American Society for Information Science and Technology. 32(5):23-26.
Rand W, Brown D, Riolo R, Robinson D.  2005.  Toward a graphical ABM toolkit with GIS integration. Proceedings of Agent2005.
Mylopoulos J, Borgida A, Cohen P, Roussopoulos N, Tsotsos J, Wong H.  1976.  TORUS: A step towards bridging the gap between data bases and the casual user. Information Systems. 2(2):49-64.
Sane N, Kee H, Seetharaman G, Bhattacharyya SS.  2011.  Topological Patterns for Scalable Representation and Analysis of Dataflow Graphs. Journal of Signal Processing Systems. 65(2):229-244.
Hu Y, Zhai K, Edelman V, Boyd-Graber J.  Submitted.  Topic Models for Translation Domain Adaptation. mimno.infosci.cornell.edu.
Eidelman V, Boyd-Graber J, Resnik P.  2012.  Topic Models for Dynamic Translation Model Adaptation. Association for Computational Linguistics.
Berkman O, JaJa JF, Krishnamurthy S, Thurimella R, Vishkin U.  1994.  Top-Bottom Routing around a Rectangle is as Easy as Computing Prefix Minima. SIAM Journal on Computing. 23(3):449-465.
Bederson BB, Grosjean J, Meyer J.  2004.  Toolkit design for interactive structured graphics. Software Engineering, IEEE Transactions on. 30(8):535-546.
Zhang D, Chen T, Ziv I, Rosenzweig R, Matiuhin Y, Bronner V, Glickman MH, Fushman D.  2009.  Together, Rpn10 and Dsk2 Can Serve as a Polyubiquitin Chain-Length Sensor. Molecular Cell. 36(6):1018-1033.
Bullock SS, Brennen GK, O’Leary DP.  2005.  Time reversal and n-qubit canonical decompositions. Journal of Mathematical Physics. 46(6):062104-062104-19-062104-062104-19.
Bullock SS, Brennen GK, O’Leary DP.  2005.  Time reversal and n-qubit canonical decompositions. Journal of Mathematical Physics. 46(6):062104-062104-19-062104-062104-19.
Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.  2013.  TIGRFAMs and Genome Properties in 2013.. Nucleic Acids Res. 41(Database issue):D387-95.
Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.  2013.  TIGRFAMs and Genome Properties in 2013.. Nucleic Acids Res. 41(Database issue):D387-95.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.

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