Publications

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Journal Articles
desJardins M, Durfee EH, Ortiz J., Wolverton MJ.  1999.  A Survey of Research in Distributed, Continual Planning. AI Magazine. 20(4):13-13.
Weiss K, De Floriani L.  2009.  Supercubes: A High-Level Primitive for Diamond Hierarchies. Visualization and Computer Graphics, IEEE Transactions on. 15(6):1603-1610.
Zhang N, Wang Q, Ehlinger A, Randles L, Lary JW, Kang Y, Haririnia A, Storaska AJ, Cole JL, Fushman D et al..  2009.  Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13. Molecular Cell. 35(3):280-290.
Zhang N, Wang Q, Ehlinger A, Randles L, Lary JW, Kang Y, Haririnia A, Storaska AJ, Cole JL, Fushman D et al..  2009.  Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13. Molecular Cell. 35(3):280-290.
Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N.  2006.  Structure of social contact networks and their impact on epidemics. DIMACS Series in Discrete Mathematics and Theoretical Computer Science. 70:181-181.
Weldon LJ, Koved L, Shneiderman B.  1985.  The Structure of Information in Online and Paper Technical Manuals. Proceedings of the Human Factors and Ergonomics Society Annual MeetingProceedings of the Human Factors and Ergonomics Society Annual Meeting. 29(12):1110-1113.
Fushman D, Wilkinson KD.  2011.  Structure and recognition of polyubiquitin chains of different lengths and linkage. F1000 Biology ReportsF1000 Biol Rep. 3
Varadan R, Walker O, Pickart C, Fushman D.  2002.  Structural Properties of Polyubiquitin Chains in Solution. Journal of Molecular Biology. 324(4):637-647.
Zotenko E, Dogan R I, Wilbur JW, O'Leary DP, Przytycka TM.  2007.  Structural Footprinting in Protein Structure Comparison: The Impact of Structural Fragments. BMC Structural Biology. 7(53)
Mannes A, Sliva A, V.S. Subrahmanian, Wilkenfeld J.  2008.  Stochastic opponent modeling agents: A case study with Hamas. Proceedings of ICCCD.
Williams LR, Jacobs DW.  1997.  Stochastic completion fields: A neural model of illusory contour shape and salience. Neural Computation. 9(4):837-858.
White J R, Nagarajan N, Pop M.  2009.  Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput Biology. 5(4):e1000352-e1000352.
Pugh W, Wonnacott D.  1994.  Static analysis of upper and lower bounds on dependences and parallelism. ACM Transactions on Programming Languages and SystemsACM Trans. Program. Lang. Syst.. 16(4):1248-1278.
Mount SM, Burks C, Herts G, Stormo GD, White O, Fields C.  1992.  Splicing signals in Drosophila: intron size, information content, and consensus sequences. Nucleic Acids ResearchNucl. Acids Res.. 20(16):4255-4262.
Dogan RI, Getoor L, Wilbur WJ, Mount SM.  2007.  SplicePort--An interactive splice-site analysis tool. Nucleic Acids Research. 35(Web Server):W285-W291-W285-W291.
Chellappa R, Heinzelman W, Konrad J, Schonfeld D, Wolf M.  2010.  Special Section on Distributed Camera Networks: Sensing, Processing, Communication, and Implementation. Image Processing, IEEE Transactions on. 19(10):2513-2515.
Chellappa R, Cavallaro A, Wu Y, Shan C, Fu Y, Pulli K.  2011.  Special Issue on Video Analysis on Resource-Limited Systems. IEEE Transactions on Circuits and Systems for Video Technology. 21(10):1349-1352.
JaJa JF, Wang PY.  1994.  Special issue on data parallel algorithms and programming. Journal of Parallel and Distributed Computing. 21(1):1-3.
Wallace RS, Ong PW, Bederson BB, Schwartz EL.  1994.  Space variant image processing. International Journal of Computer Vision. 13(1):71-90.
McDonnell JM, Fushman D, Cahill SM, Zhou W, Wolven A, Wilson CB, Nelle TD, Resh MD, Wills J, Cowburn D.  1998.  Solution structure and dynamics of the bioactive retroviral M domain from rous sarcoma virus. Journal of Molecular Biology. 279(4):921-928.
McDonnell JM, Fushman D, Cahill SM, Zhou W, Wolven A, Wilson CB, Nelle TD, Resh MD, Wills J, Cowburn D.  1998.  Solution structure and dynamics of the bioactive retroviral M domain from rous sarcoma virus. Journal of Molecular Biology. 279(4):921-928.
McDonnell JM, Fushman D, Cahill SM, Zhou W, Wolven A, Wilson CB, Nelle TD, Resh MD, Wills J, Cowburn D.  1998.  Solution structure and dynamics of the bioactive retroviral M domain from rous sarcoma virus. Journal of Molecular Biology. 279(4):921-928.
Steitz JA, Wolin SL, Rinke J, Pettersson I, Mount SM, Lerner EA, Hinterberger M, Gottlieb E.  1983.  Small Ribonucleoproteins from Eukaryotes: Structures and Roles in RNA Biogenesis. Cold Spring Harbor Symposia on Quantitative BiologyCold Spring Harb Symp Quant Biol. 47:893-900.
Morris MS, Reggia JA, Ahuja SB, Hart J, Watson V.  1984.  SLIPS. Journal of Medical Systems. 8(3):197-204.
Kurc T, Catalyurek U, Zhang X, Saltz J, Martino R, Wheeler M, Peszyńska M, Sussman A, Hansen C, Sen M et al..  2005.  A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies. Concurrency and Computation: Practice and Experience. 17(11):1441-1467.

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