Publications

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2012
Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH.  2012.  A framework for human microbiome research. Nature. 486:215-221.
Blanco MAndres, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y.  2012.  Global secretome analysis identifies novel mediators of bone metastasis. Cell Research. 22(9):1339-1355.
Patel VM, Maleh R, Gilbert AC, Chellappa R.  2012.  Gradient-based Image Recovery Methods from Incomplete Fourier Measurements. IEEE Transactions on Image Processing. PP(99):1-1.
Chowdhury S, Svec P, Wang C, Losert W, Gupta SK.  2012.  Gripper synthesis for indirect manipulation of cells using Holographic Optical Tweezers. :2749-2754.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA et al..  2012.  Vibrio cholerae in a historically cholera-free country. Environmental Microbiology Reports. (4):381-389.
Song Z, Ismael S, Grimes S, Doermann D, Strassel S.  2012.  Linguistic Resources for Handwriting Recognition and Translation Evaluation. Eight International Conference on Language Resources and Evaluation (LREC'12).
Wu S, Gong L, Rand W, Raschid L.  2012.  Making Recommendations in a Microblog to Improve the Impact of a Focal User. 6th ACM Conference on Recommender Systems (RecSys).
Hwang H, Lauw HW, Getoor L, Ntoulas A.  2012.  Organizing User Search Histories. Knowledge and Data Engineering, IEEE Transactions on. 24(5):912-925.
Zheleva E, Terzi E, Getoor L.  2012.  Privacy in Social Networks. Synthesis Lectures on Data Mining and Knowledge Discovery. 3(1):1-85.
Stauder M, Huq A, Pezzati E, Grim CJ, Ramoino P, Pane L, Colwell RR, Pruzzo C, Vezzulli L.  2012.  Role of GbpA protein, an important virulence-related colonization factor, for Vibrio cholerae's survival in the aquatic environment. Environmental Microbiology Reports. (4):439-445.
Rosenzweig R, Bronner V, Zhang D, Fushman D, Glickman MH.  2012.  Rpn1 and Rpn2 coordinate ubiquitin processing factors at the proteasome. Journal of Biological ChemistryJ. Biol. Chem..
Patro R, Dickerson JP, Bista S, Gupta SK, Varshney A.  2012.  Speeding Up Particle Trajectory Simulations under Moving Force Fields using GPUs. Journal of Computing and Information Science in Engineering.
Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS et al..  2012.  Structure, function and diversity of the healthy human microbiome. Nature. 486:207-214.
Martineau J, Mokashi R, Chapman D, Grasso M, Brady M, Yesha Y, Yesha Y, Cardone A, Dima A.  2012.  Sub-cellular feature detection and automated extraction of collocalized actin and myosin regions. the 2nd ACM SIGHIT symposiumProceedings of the 2nd ACM SIGHIT symposium on International health informatics - IHI '12. :399.
Papadimitriou P, Tsaparas P, Fuxman A, Getoor L.  2012.  TACI: Taxonomy-Aware Catalog Integration. IEEE Transactions on Knowledge and Data Engineering (TKDE).
Katz J, MacKenzie P, Taban G, Gligor V.  2012.  Two-server password-only authenticated key exchange. Journal of Computer and System Sciences. 78(2):651-669.
Goodrich MT, Nguyen D, Ohrimenko O, Papamanthou C, Tamassia R, Triandopoulos N, Lopes CVideira.  2012.  Verifying Search Results Over Web Collections. arXiv:1204.5446 [cs].
Chetty M, Banks R, Brush A.J., Donner J, Grinter R.  2012.  You'Re Capped: Understanding the Effects of Bandwidth Caps on Broadband Use in the Home. SIGCHI '12. :3021-3030.
2011
Wobbrock JO, Kane SK, Gajos KZ, Harada S, Froehlich J.  2011.  Ability-based design: Concept, principles and examples. ACM Transactions on Accessible Computing (TACCESS). 3(3)
Liu B, Gibbons T, Ghodsi M, Treangen T, Pop M.  2011.  Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC Genomics. 12(Suppl 2):S4-S4.
Liu B, Gibbons T, Ghodsi M, Treangen T, Pop M.  2011.  Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC Genomics. 12(Suppl 2):S4-S4.
Chen D, Bilgic M, Getoor L, Jacobs DW, Mihalkova L, Tom Yeh.  2011.  Active inference for retrieval in camera networks. Person-Oriented Vision (POV), 2011 IEEE Workshop on. :13-20.
Chen D, Bilgic M, Getoor L, Jacobs DW, Mihalkova L, Tom Yeh.  2011.  Active inference for retrieval in camera networks. Person-Oriented Vision (POV), 2011 IEEE Workshop on. :13-20.
Hurter C, Girouard A, Riche N, Plaisant C.  2011.  Active progress bars: facilitating the switch to temporary activities. Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. :1963-1968.

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