Publications

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Landau GM, Vishkin U, Nussinov R.  1986.  An efficient string matching algorithm with k differences for nudeotide and amino acid sequences. Nucleic acids research. 14(1):31-31.
Hao X, Varshney A.  2004.  Efficient solution of poisson-boltzmann equation for electrostatics of large molecules. High-Performance Computing Symposium (April 2004). :71-76.
Dachman-Soled D, Malkin T, Raykova M, Yung M.  2009.  Efficient Robust Private Set Intersection. Applied Cryptography and Network Security. :125-142.
Amir A, Landau GM, Vishkin U.  1992.  Efficient pattern matching with scaling. Journal of Algorithms. 13(1):2-32.
Canetti R, Dachman-Soled D, Vaikuntanathan V, Wee H.  2012.  Efficient Password Authenticated Key Exchange via Oblivious Transfer. Public Key Cryptography – PKC 2012. :449-466.
Ramachandran V, Vishkin U.  1988.  Efficient parallel triconnectivity in logarithmic time. VLSI Algorithms and Architectures. :33-42.
Vishkin U.  1985.  On efficient parallel strong orientation. Information Processing Letters. 20(5):235-240.
Tarjan RE, Vishkin U.  1985.  An efficient parallel biconnectivity algorithm. SIAM Journal on Computing. 14:862-862.
Landau GM, Vishkin U.  1986.  Efficient Parallel and Serial String Matching. Computer Science Department Technical Report. 221
Perl Y, Vishkin U.  1985.  Efficient implementation of a shifting algorithm. Discrete applied mathematics. 12(1):71-80.
Vishkin U.  1983.  Efficient distributed orientation algorithm.. IEEE TRANS. INFO. THEORY.. 29(4):624-628.
Ryabov YE, Geraghty C, Varshney A, Fushman D.  2006.  An Efficient Computational Method for Predicting Rotational Diffusion Tensors of Globular Proteins Using an Ellipsoid Representation. Journal of the American Chemical Society. 128(48):15432-15444.
Sahinalp SC, Vishkin U.  1996.  Efficient approximate and dynamic matching of patterns using a labeling paradigm. Foundations of Computer Science, 1996. Proceedings., 37th Annual Symposium on. :320-328.
Wang Q, JaJa JF, Varshney A.  2007.  An efficient and scalable parallel algorithm for out-of-core isosurface extraction and rendering. Journal of Parallel and Distributed Computing. 67(5):592-603.
Dickinson BC, Varadan R, Fushman D.  2007.  Effects of cyclization on conformational dynamics and binding properties of Lys48-linked di-ubiquitin. Protein Science. 16(3):369-378.
D
Xia JC, Varshney A.  1996.  Dynamic view-dependent simplification for polygonal models. Visualization '96. Proceedings.. :327-334.
Ramachandran A, Hao S, Khandelwal H, Feamster N, Vempala S.  2008.  A Dynamic Reputation Service for Spotting Spammers. GT-CS-08-09
Vishkin U, Wigderson A.  1983.  Dynamic parallel memories. Information and control. 56(3):174-182.
M. Wu, Joyce RA, Vetro A, Wong H-S, Guan L, Kung S-Y.  2005.  Dynamic network resource allocation using multimedia content features and .... 09/795,952(6947378)
Vezzulli L, Guzmán CA, Colwell RR, Pruzzo C.  2008.  Dual role colonization factors connecting Vibrio cholerae's lifestyles in human and aquatic environments open new perspectives for combating infectious diseases. Current Opinion in Biotechnology. 19(3):254-259.
Ge QJ, Varshney A, Menon JP, Chang CF.  1998.  Double quaternions for motion interpolation. Proceedings of the ASME Design Engineering Technical Conference.
Feamster N, Voellmy A, Agarwal A, Hudak P, Burnett S, Launchbury J.  2010.  Don't Configure the Network, Program It! Domain-Specific Programming Languages for Network Systems. YALEU/DCS/RR-1432
Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM et al..  2003.  The Dog Genome: Survey Sequencing and Comparative Analysis. ScienceScience. 301(5641):1898-1903.
Raasi S, Varadan R, Fushman D, Pickart CM.  2005.  Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nature Structural & Molecular Biology. 12(8):708-714.
Wagstrom P, Martino J, von Kaenel J, Chetty M, Thomas J, Jones L.  2011.  A Dive into Online Community Properties. CSCW '11. :725-728.

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