Publications

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2009
Vegas S, Juristo N, Basili VR.  2009.  Maturing Software Engineering Knowledge through Classifications: A Case Study on Unit Testing Techniques. Software Engineering, IEEE Transactions on. 35(4):551-565.
Bitsakos K, Domke J, Fermüller C, Aloimonos Y.  2009.  MEASURING 1ST ORDER STRETCH WITH A SINGLE FILTER. Relation. 10(1.132):691-691.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 10(1):1-10.
Balkan AO, Qu G, Vishkin U.  2009.  Mesh-of-Trees and Alternative Interconnection Networks for Single-Chip Parallelism. Very Large Scale Integration (VLSI) Systems, IEEE Transactions on. 17(10):1419-1432.
Bowler C, Karl DM, Colwell RR.  2009.  Microbial oceanography in a sea of opportunity. Nature. 459(7244):180-184.
Bowen D, Mayergoyz ID, Zhang Z, McAvoy P, Krafft C, Kroop D.  2009.  Modeling and Testing of Ethernet Transformers. Magnetics, IEEE Transactions on. 45(10):4793-4796.
Liu R, Hannenhalli S, Bucan M.  2009.  Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons. Genome Biology. 10(7):R72-R72.
Boyd-Graber J, Blei DM.  2009.  Multilingual topic models for unaligned text. Proceedings of the Twenty-Fifth Conference on Uncertainty in Artificial Intelligence. :75-82.
Boyd-Graber J, Blei DM.  2009.  Multilingual topic models for unaligned text. Proceedings of the Twenty-Fifth Conference on Uncertainty in Artificial Intelligence. :75-82.
Khondker M, Bhuiyan R A, Yeasmin J, Alam M, Sack BR, Huq A, Colwell RR.  2009.  New records of phytoplankton for Bangladesh. 9. Some rare and a new species. Bangladesh Journal of Plant Taxonomy. 16(1)
d'Aquino M, Serpico C, Bertotti G, Mayergoyz ID, Bonin R.  2009.  Nonlinear Resonant and Chaotic Dynamics in Microwave Assisted Magnetization Switching. Magnetics, IEEE Transactions on. 45(10):3950-3953.
d'Aquino M, Serpico C, Bertotti G, Mayergoyz ID, Bonin R.  2009.  Nonlinear Resonant and Chaotic Dynamics in Microwave Assisted Magnetization Switching. Magnetics, IEEE Transactions on. 45(10):3950-3953.
Winder RK, Reggia JA, Weems SA, Bunting MF.  2009.  An oscillatory hebbian network model of short-term memory. Neural computation. 21(3):741-761.
Berland M, Rand W.  2009.  Participatory simulation as a tool for agent-based simulation. Proceedings of the International Conference on Agents and Artificial Intelligence (ICAART-09).
Baden R, Bender A, Spring N, Bhattacharjee B, Starin D.  2009.  Persona: an online social network with user-defined privacy. Proceedings of the ACM SIGCOMM 2009 conference on Data communication. :135-146.
Baden R, Bender A, Spring N, Bhattacharjee B, Starin D.  2009.  Persona: an online social network with user-defined privacy. Proceedings of the ACM SIGCOMM 2009 conference on Data communication. :135-146.
Baden R, Bender A, Spring N, Bhattacharjee B, Starin D.  2009.  Persona: an online social network with user-defined privacy. Proceedings of the ACM SIGCOMM 2009 conference on Data communication. :135-146.
Starin D, Baden R, Bender A, Spring N, Bhattacharjee B.  2009.  Persona : An Online Social Network with User-Defined Privacy Categories and Subject Descriptors. Computer. 39(4):135-146.
Starin D, Baden R, Bender A, Spring N, Bhattacharjee B.  2009.  Persona : An Online Social Network with User-Defined Privacy Categories and Subject Descriptors. Computer. 39(4):135-146.
Starin D, Baden R, Bender A, Spring N, Bhattacharjee B.  2009.  Persona : An Online Social Network with User-Defined Privacy Categories and Subject Descriptors. Computer. 39(4):135-146.
Khan Z, Bloom JS, Kruglyak L, Singh M.  2009.  A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. Bioinformatics. 25(13):1609-1616.
Constantin de Magny G, Long W, Brown CW, Hood RR, Huq A, Murtugudde R, Colwell RR.  2009.  Predicting the distribution of Vibrio spp. in the Chesapeake Bay: a Vibrio cholerae case study. EcoHealth. 6(3):378-389.
Khan Z, Bloom JS, Garcia BA, Singh M, Kruglyak L.  2009.  Protein quantification across hundreds of experimental conditions. Proceedings of the National Academy of Sciences. 106(37):15544-15548.
Chang J, Boyd-Graber J, Gerrish S, Wang C, Blei DM.  2009.  Reading tea leaves: How humans interpret topic models. Proceedings of the 23rd Annual Conference on Neural Information Processing Systems. 31
Chang J, Boyd-Graber J, Gerrish S, Wang C, Blei DM.  2009.  Reading tea leaves: How humans interpret topic models. Proceedings of the 23rd Annual Conference on Neural Information Processing Systems. 31

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