Publications

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Journal Articles
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Roos P, Carr RJ, Nau DS.  2010.  Evolution of state-dependent risk preferences. ACM Transactions on Intelligent Systems and Technology (TIST). 1(1):6:1–6:21-6:1–6:21.
Ni J, Turaga P, Patel VM, Chellappa R.  2011.  Example-Driven Manifold Priors for Image Deconvolution. Image Processing, IEEE Transactions on. 20(11):3086-3096.
Zaphiris P, Shneiderman B, Norman KL.  2002.  Expandable indexes vs. sequential menus for searching hierarchies on the World Wide Web. Behaviour & Information Technology. 21(3):201-207.
Hochstein L, Nakamura T, Basili VR, Asgari S, Zelkowitz MV, Hollingsworth J, Shull F, Carver J, Voelp M, Zazworka N et al..  2006.  Experiments to understand HPC time to development. CTWatch Quarterly.
Natarajan S, Tadepalli P, Fern A, De Raedt L, Dietterich T, Getoor L, Kersting K, Muggleton SH.  2008.  Exploiting Prior Knowledge in Intelligent Assistants: Combining Relational Models with Hierarchies. Probabilistic, Logical and Relational Learning - A Further Synthesis.
Norooz L, Froehlich J.  2013.  Exploring early designs for teaching anatomy and physiology to children using wearable e-textiles. IDC '13 Proceedings of the 12th International Conference on Interaction Design and Children. :577-580.
Chou HH, Reggia JA, Navarro-Gonzalez R, Wu J.  1994.  An extended cellular space method for simulating autocatalytic oligonucleotides. Computers & chemistry. 18(1):33-43.
Regli WC, Gupta SK, Nau DS.  1995.  Extracting alternative machining features: An algorithmic approach. Research in Engineering Design. 7(3):173-192.
Takala SL, Coulibaly D, Thera MA, Batchelor AH, Cummings MP, Escalante AA, Ouattara A, Traoré K, Niangaly A, Djimdé AA et al..  2009.  Extreme polymorphism in a vaccine antigen and risk of clinical malaria: implications for vaccine development. Sci Transl Med. 1(2):2ra5-2ra5.
Brown DG, Robinson DT, An L, Nassauer JI, Zellner M, Rand W, Riolo R, Page SE, Low B, Wang Z.  2008.  Exurbia from the bottom-up: Confronting empirical challenges to characterizing a complex system. Geoforum. 39(2):805-818.
Landau GM, Vishkin U, Nussinov R.  1990.  Fast alignment of DNA and protein sequences. Methods in enzymology. 183:487-502.
Memarsadeghi N, Mount D, Netanyahu NS, LeMoigne J.  2003.  A Fast Implementation of the ISOCLUS Algorithm. IEEE 2003 International Geoscience and Remote Sensing Symposium.
Memarsadeghi N, Mount D, Netanyahu NS, Le Moigne J, de Berg M.  2007.  A fast implementation of the ISODATA clustering algorithm. International Journal of Computational Geometry and Applications. 17(1):71-103.
Nagy JG, O'Leary DP.  1997.  Fast iterative image restoration with a spatially varying PSF. Proceedings of SPIE. 3162(1):388-399.

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