Publications

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2012
Ye C, Ma ZS, Cannon CH, Pop M, Yu DW.  2012.  Exploiting sparseness in de novo genome assembly. BMC bioinformatics. 13(Suppl 6)
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M et al..  2012.  GAGE: A Critical Evaluation of Genome Assemblies and Assembly Algorithms. Genome Research. 22(3):557-567.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Zajic D, Doermann D, Bloodgood M, Rodrigues P, Ye P, Zotkina E.  2012.  A Hybrid System for Error Detection in Electronic Dictionaries. Technical Reports of the Center for the Advanced Study of Language.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Kumar J, Ye P, Doermann D.  2012.  Learning Document Structure for Retrieval and Classification. International Conference on Pattern Recognition (ICPR 2012). :1558-1561.
Ye P, Doermann D.  2012.  Learning features for predicting OCR accuracy. International Conference on Pattern Recognition (ICPR). :3204-3207.
Kang L, Kumar J, Ye P, Doermann D.  2012.  Learning Text-line Segmentation using Codebooks and Graph Partitioning. International Conference on Frontiers in Handwriting Recognition (ICFHR). :63-68.
Ye P, Doermann D.  2012.  No-Reference Image Quality Assessment using Visual Codebooks. Image Processing, IEEE Transactions on. PP(99):1-1.
Bloodgood M, Ye P, Rodrigues P, Zajic D, Doermann D.  2012.  A Random Forest System Combination Approach for Error Detection in Digital Dictionaries. Innovative hybrid approaches to the processing of textual data, EACL 2012 Workshop. :78-86.
Nahar S, Sultana M, Naser NM, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, Sack BR et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260
Martineau J, Mokashi R, Chapman D, Grasso M, Brady M, Yesha Y, Yesha Y, Cardone A, Dima A.  2012.  Sub-cellular feature detection and automated extraction of collocalized actin and myosin regions. the 2nd ACM SIGHIT symposiumProceedings of the 2nd ACM SIGHIT symposium on International health informatics - IHI '12. :399.
Martineau J, Mokashi R, Chapman D, Grasso M, Brady M, Yesha Y, Yesha Y, Cardone A, Dima A.  2012.  Sub-cellular feature detection and automated extraction of collocalized actin and myosin regions. the 2nd ACM SIGHIT symposiumProceedings of the 2nd ACM SIGHIT symposium on International health informatics - IHI '12. :399.
Ye P, Kumar J, Kang L, Doermann D.  2012.  Unsupervised Feature Learning Framework for No-reference Image Quality Assessment. CVPR.
2013
Hu Y, Boyd-Graber J, III HDaume, Z Ying I.  2013.  Binary to Bushy: Bayesian Hierarchical Clustering with the Beta Coalescent. :1079-1087.
Kumar J, Ye P, Doermann D.  2013.  A Dataset for Quality Assessment of Camera Captured Document Images.
Ye P, Doermann D.  2013.  Document Image Quality Assessment: A Brief Survey. International Conference on Document Analysis and Recognition (ICDAR).
Ye P, Kumar J, Kang L, Doermann D.  2013.  Real-time No-Reference Image Quality Assessment based on Filter Learning. International Conference on Computer Vision and Pattern Recognition (CVPR).
Ye Q, Doermann D.  2013.  Scene Text Detection via Integrated Discrimination of Component Appearance and Consensus.
Papamanthou C, Shi E, Tamassia R, Yi K.  2013.  Streaming Authenticated Data Structures. Advances in Cryptology – EUROCRYPT 2013. :353-370.
Kumar J, Ye P, Doermann D.  2013.  Structural similarity for document image classification and retrieval. Pattern Recognition Letters.
2014
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
2016
Motesharrei S, Rivas J, Kalnay E, Asrar GR, Busalacchi AJ, Cahalan RF, Cane MA, Colwell RR, Feng K, Franklin RS et al..  2016.  Modeling Sustainability: Population, Inequality, Consumption, and Bidirectional Coupling of the Earth and Human Systems. National Science Review. :nww081.

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