Publications

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2011
Lieberman MD, Taheri S, Guo H, Mirrashed F, Yahav I, Aris A, Shneiderman B.  2011.  Visual Exploration across Biomedical Databases. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8(2):536-550.
Stonedahl F, Anderson D, Rand W.  2011.  When does simulated data match real data? Proceedings of the 13th annual conference companion on Genetic and evolutionary computation. :231-232.
Chetty M, Haslem D, Baird A, Ofoha U, Sumner B, Grinter R.  2011.  Why is My Internet Slow?: Making Network Speeds Visible SIGCHI '11. :1889-1898.
2012
W Easterday R, Kausrud KL, Star B, Heier L, Haley BJ, Ageyev V, Colwell RR, Stenseth NChr.  2012.  An additional step in the transmission of Yersinia pestis? The ISME Journal. (2):231-236.
W Easterday R, Kausrud KL, Star B, Heier L, Haley BJ, Ageyev V, Colwell RR, Stenseth NChr.  2012.  An additional step in the transmission of Yersinia pestis? The ISME Journal. (2):231-236.
Lin HC, Goldstein S, Mendelowitz L, Zhou S, Wetzel J, Schwartz DC, Pop M.  2012.  AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformatics. 13(1)
Haft DH, Payne SH, Selengut JD.  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.. J Bacteriol. 194(1):36-48.
Svec P, Gupta SK.  2012.  Automated synthesis of action selection policies for unmanned vehicles operating in adverse environments. Autonomous Robots. 32(2):149-164.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Satinoff B, Boyd-Graber J.  2012.  Besting the Quiz Master: Crowdsourcing Incremental Classification Games. Empirical Methods in Natural Language Processing.
Gevers D, Pop M, Schloss PD, Huttenhower C.  2012.  Bioinformatics for the Human Microbiome Project. PLoS Computational Biology. 8(11):e1002779.
Song D, Elaine Shi, Fischer I, Shankar U.  2012.  Cloud Data Protection for the Masses. Computer. 45(1):39-45.
Song D, Elaine Shi, Fischer I, Shankar U.  2012.  Cloud Data Protection for the Masses. Computer. 45(1):39-45.
Song D, Elaine Shi, Fischer I, Shankar U.  2012.  Cloud Data Protection for the Masses. Computer. 45(1):39-45.
Nikolova S, Boyd-Graber J, Fellbaum C.  2012.  Collecting Semantic Similarity Ratings to Connect Concepts in Assistive Communication Tools. Modeling, Learning, and Processing of Text Technological Data StructuresModeling, Learning, and Processing of Text Technological Data Structures. 370:81-93.
V.S. Subrahmanian, Mannes A, Sliva A, Shakarian J, Dickerson JP.  2012.  Computational Analysis of Terrorist Groups: Lashkar-e-Taiba.
V.S. Subrahmanian, Mannes A, Sliva A, Shakarian J, Dickerson JP.  2012.  Computational Analysis of Terrorist Groups: Lashkar-e-Taiba.
V.S. Subrahmanian, Mannes A, Sliva A, Shakarian J, Dickerson JP.  2012.  Computational Analysis of Terrorist Groups: Lashkar-e-Taiba.
Senoh M, Ghosh‐Banerjee J, Ramamurthy T, Colwell RR, Miyoshi S-ichi, Nair BG, Takeda Y.  2012.  Conversion of viable but nonculturable enteric bacteria to culturable by co‐culture with eukaryotic cells. Microbiology and Immunology. 56(5):342-345.
Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S.  2012.  Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS one. 7(6)
Shen C-C, Wu S, Sane N, Wu H-H, Plishker W, Bhattacharyya SS.  2012.  Design and Synthesis for Multimedia Systems Using the Targeted Dataflow Interchange Format. IEEE Transactions on Multimedia. 14(3):630-640.
Shen C-C, Wu S, Sane N, Wu H-H, Plishker W, Bhattacharyya SS.  2012.  Design and Synthesis for Multimedia Systems Using the Targeted Dataflow Interchange Format. IEEE Transactions on Multimedia. 14(3):630-640.

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