Publications

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Hannenhalli S, Chappey C, Koonin EV, Pevzner PA.  1995.  Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case. Genomics. 30(2):299-311.
Hannenhalli S, Levy S.  2003.  Transcriptional regulation of protein complexes and biological pathways. Mammalian Genome. 14(9):611-619.
Hannenhalli S, Russell RB.  2001.  Analysis and prediction of protein functional sub-types from protein sequence alignments. EP20000203764(EP1096411)
Hannenhalli S, Levy S.  2002.  Predicting Transcription Factor Synergism. Nucleic Acids ResearchNucl. Acids Res.. 30(19):4278-4284.
Hannenhalli S.  2008.  Eukaryotic Transcription Factor Binding Sites—modeling and Integrative Search Methods. BioinformaticsBioinformatics. 24(11):1325-1331.
Hannenhalli S, Pevzner P.  1995.  Towards a computational theory of genome rearrangements. Computer Science TodayComputer Science Today. 1000:184-202.
Hannenhalli S, Russell RB.  2000.  Analysis and prediction of functional sub-types from protein sequence alignments. Journal of Molecular Biology. 303(1):61-76.
Hannenhalli S.  1996.  Polynomial-time algorithm for computing translocation distance between genomes. Discrete Applied Mathematics. 71(1–3):137-151.
Hannenhalli S.  1995.  Transforming men into mice (a computational theory of genome rearrangements).
Hannenhalli S.  2007.  Eukaryotic Transcriptional Regulation: Signals, Interactions, and Modules. Computational genomics: current methods. :21-21.
Hannenhalli S, Wang L-S.  2005.  Enhanced position weight matrices using mixture models. Bioinformatics. 21(Suppl 1):i204-i212-i204-i212.
Hannenhalli S, Pevzner P.  1996.  To cut… or not to cut (applications of comparative physical maps in molecular evolution). Proceedings of the seventh annual ACM-SIAM symposium on Discrete algorithms. :304-313.
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.
Hannenhalli S.  2006.  Invited Talk: Deciphering Gene Regulatory Networks by in silico approaches. 6th International Workshop on Data Mining in Bioinformatics (BIOKDD06). :31-31.
Hannenhalli S.  1995.  Polynomial-time algorithm for computing translocation distance between genomes. Combinatorial Pattern MatchingCombinatorial Pattern Matching. 937:162-176.
Hannenhalli S, Pevzner PA.  1999.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACM. 46(1):1-27.
Hannenhalli S, Feldman W, Lewis HF, Skiena SS, Pevzner PA.  1996.  Positional sequencing by hybridization. Computer applications in the biosciences : CABIOS. 12(1):19-24.
Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P.  2002.  Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77:1-19.
Han B, Ji L, Lee S, Miller RR, Bhattacharjee B.  2009.  Channel Access Throttling for Overlapping BSS Management. Communications, 2009. ICC '09. IEEE International Conference on. :1-6.
Han B, Davis LS.  2006.  Semi-Parametric Model-Based Clustering for DNA Microarray Data. Pattern Recognition, 2006. ICPR 2006. 18th International Conference on. 3:324-327.
Han B, Yang C, Duraiswami R, Davis LS.  2005.  Bayesian filtering and integral image for visual tracking. Proceedings of the Worshop on Image Analysis for Multimedia Interactive Services (WIAMIS'05).
Han B, Comaniciu D, Zhu Y, Davis LS.  2008.  Sequential Kernel Density Approximation and Its Application to Real-Time Visual Tracking. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 30(7):1186-1197.
Han B, Davis LS.  2004.  Object tracking by adaptive feature extraction. Image Processing, 2004. ICIP '04. 2004 International Conference on. 3:1501-1504Vol.3-1501-1504Vol.3.
Han Z, Lin C-K, Goldsman N, Mayergoyz ID, Yu S, Stettler M.  1999.  Gate leakage current simulation by Boltzmann transport equation and its dependence on the gate oxide thickness. Simulation of Semiconductor Processes and Devices, 1999. SISPAD '99. 1999 International Conference on. :247-250.
Han B, Schulman A, Gringoli F, Spring N, Bhattacharjee B, Nava L, Ji L, Lee S, Miller R.  2010.  Maranello: practical partial packet recovery for 802.11. Proceedings of the 7th USENIX conference on Networked systems design and implementation. :14-14.

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