Publications

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Journal Articles
Feamster N, Andersen DG, Balakrishnan H, Kaashoek FM.  2003.  Measuring the effects of internet path faults on reactive routing. SIGMETRICS Perform. Eval. Rev.. 31(1):126-137.
Froehlich J, Neumann J, Oliver N.  2008.  Measuring the pulse of the city through shared bicycle programs. Proc. of UrbanSense08.
Dellarocas C, Katona Z, Rand W.  2012.  Media, Aggregators and the Link Economy: Strategic Hyperlink Formation in Content Networks. Management Science.
Youssef A, Shneiderman B.  2002.  Media Conversion from Visual to Audio: Voice Browsers. Technical Reports of the Computer Science Department.
Markowitz E, Bernstam EV, Herskovic J, Zhang J, Shneiderman B, Plaisant C, Johnson TR.  2011.  Medication Reconciliation: Work Domain Ontology, Prototype Development, and a Predictive Model. AMIA Annual Symposium ProceedingsAMIA Annu Symp Proc. 2011:878-887.
Shneiderman B.  2002.  Meeting human needs with new digital imaging technologies. IEEE Multimedia. 9(4):8-14.
Jumat M, Hasan N, Subramanian P, Heberling C, Colwell RR, Hong P-Y.  2017.  Membrane Bioreactor-Based Wastewater Treatment Plant in Saudi Arabia: Reduction of Viral Diversity, Load, and Infectious Capacity. Water. 96046Volume 70(7):534.
Norman KL, Schwartz JP, Shneiderman B.  1984.  Memory For Menus: Effects of Study Mode. University of Maryland Computer Science Technical Report Series, CS-TR-1412.
Stewart G.W.  2003.  Memory leaks in derived types revisited. SIGPLAN Fortran Forum. 22(3):25-27.
Elgot-drapkin J, Miller M, Perlis D.  1991.  Memory, reason and time: the Step-Logic approach. Philosophy and AI: Essays at the Interface. :79-103.
Ko MY, Shen CC, Bhattacharyya SS.  2008.  Memory-constrained block processing for dsp software optimization. Journal of Signal Processing Systems. 50(2):163-177.
Lee C H, Varshney A, Jacobs DW.  2005.  Mesh saliency. ACM transactions on graphics. 24(3):659-666.
Kim Y, Varshney A, Jacobs DW, Guimbretière F.  2010.  Mesh saliency and human eye fixations. ACM Transactions on Applied Perception (TAP). 7(2):12:1–12:13-12:1–12:13.
Balkan AO, Qu G, Vishkin U.  2009.  Mesh-of-Trees and Alternative Interconnection Networks for Single-Chip Parallelism. Very Large Scale Integration (VLSI) Systems, IEEE Transactions on. 17(10):1419-1432.
Mount SM.  2001.  Messenger RNA Splicing Signals. eLS.
Anderson ML, Oates T, Chong W, Perlis D.  2006.  The metacognitive loop I: Enhancing reinforcement learning with metacognitive monitoring and control for improved perturbation tolerance. Journal of Experimental & Theoretical Artificial Intelligence. 18(3):387-411.
Al-Hebshi NNoor, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hassan NA, Colwell RR, Ismail A.  2019.  Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children. Journal of Oral Microbiology. (118):1557986.
Hasan NA, Chowdhury BW, Rahim N, Sultana M, Shabnam AS, Mai V, Ali A, Morris GJ, Sack BR, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of Microbiology. 27(2)
Gill SR, Pop M, DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE.  2006.  Metagenomic Analysis of the Human Distal Gut Microbiome. Science. 312(5778):1355-1359.
Roy M, Arnaud J, Jasmin P, Hamner S, Hasan N, Colwell RR, Ford T.  2018.  A Metagenomic Approach to Evaluating Surface Water Quality in Haiti. International Journal of Environmental Research and Public Health. 1542(10):2211.
Liu B, Pop M.  2011.  MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC proceedings. 5(Suppl 2)
Wang J, Ungar L, Tseng H, Hannenhalli S.  2007.  MetaProm: a neural network based meta-predictor for alternative human promoter prediction. BMC Genomics. 8(1):374-374.
Licamele L, Getoor L.  2011.  A method for the detection of meaningful and reproducible group signatures from gene expression profiles. Journal of Bioinformatics and Computational Biology. 9(3):431-451.
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental Microbiology. 5(7):599-606.
Dorr BJ, Monz C, President S, Schwartz R, Zajic D.  2005.  A methodology for extrinsic evaluation of text summarization: Does ROUGE correlate. Proceedings of the ACL Workshop on Intrinsic and Extrinsic Evaluation Measures for Machine Translation and/or Summarization. :1-8.

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