Publications
2011. ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.. BMC Bioinformatics. 12:434.
1997. Hardness of flip-cut problems from optical mapping [DNA molecules application]. Compression and Complexity of Sequences 1997. Proceedings. :275-284.
2009. Inexact Local Alignment Search over Suffix Arrays. IEEE International Conference on Bioinformatics and Biomedicine, 2009. BIBM '09. :83-87.
2006. Semi-Parametric Model-Based Clustering for DNA Microarray Data. Pattern Recognition, 2006. ICPR 2006. 18th International Conference on. 3:324-327.
2003. Properties of embedding methods for similarity searching in metric spaces. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 25(5):530-549.
2011. Visual Exploration across Biomedical Databases. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8(2):536-550.
2007. Structural Biology: Analysis of 'downhill' protein folding; Analysis of protein-folding cooperativity (Reply). Nature. 445(7129):E17-E18-E17-E18.
2003. Depth-first k-nearest neighbor finding using the MaxNearestDist estimator. Image Analysis and Processing, 2003.Proceedings. 12th International Conference on. :486-491.
2002. Interactively exploring hierarchical clustering results [gene identification]. Computer. 35(7):80-86.