Publications

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2016
Motesharrei S, Rivas J, Kalnay E, Asrar GR, Busalacchi AJ, Cahalan RF, Cane MA, Colwell RR, Feng K, Franklin RS et al..  2016.  Modeling Sustainability: Population, Inequality, Consumption, and Bidirectional Coupling of the Earth and Human Systems. National Science Review. :nww081.
Motesharrei S, Rivas J, Kalnay E, Asrar GR, Busalacchi AJ, Cahalan RF, Cane MA, Colwell RR, Feng K, Franklin RS et al..  2016.  Modeling Sustainability: Population, Inequality, Consumption, and Bidirectional Coupling of the Earth and Human Systems. National Science Review. :nww081.
Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)
Phelps C, Madhavan G, Rappuoli R, LEVIN SCOTT, Shortlife E, Colwell RR.  2016.  Strategic Planning in Population Health and Public Health Practice: A Call to Action for Higher Education. The Milbank Quarterly. 94906033(143S2):109-125.
2017
Florczyk SJ, Simon M, Juba D, P. Pine S, Sarkar S, Chen D, Baker PJ, Bodhak S, Cardone A, Brady MC et al..  2017.  A Bioinformatics 3D Cellular Morphotyping Strategy for Assessing Biomaterial Scaffold Niches. ACS Biomaterials Science & Engineering. 3(10):2302-2313.
Florczyk SJ, Simon M, Juba D, P. Pine S, Sarkar S, Chen D, Baker PJ, Bodhak S, Cardone A, Brady MC et al..  2017.  A Bioinformatics 3D Cellular Morphotyping Strategy for Assessing Biomaterial Scaffold Niches. ACS Biomaterials Science & Engineering. 3(10):2302-2313.
Florczyk SJ, Simon M, Juba D, P. Pine S, Sarkar S, Chen D, Baker PJ, Bodhak S, Cardone A, Brady MC et al..  2017.  A Bioinformatics 3D Cellular Morphotyping Strategy for Assessing Biomaterial Scaffold Niches. ACS Biomaterials Science & Engineering. 3(10):2302-2313.
Leddy MB, Hasan NA, Subramanian P, Heberling C, Cotruvo J, Colwell RR.  2017.  Characterization of Microbial Signatures From Advanced Treated Wastewater Biofilms. Journal - American Water Works Association. 109:E503-E512.
Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR.  2017.  Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139. Frontiers in Microbiology.
Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR et al..  2017.  Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. mBio. (4)
Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR et al..  2017.  Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. mBio. (4)
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)
Cheng H-C, Cardone A, Krokos E, Stoica B, Faden A, Varshney A.  2017.  Deep-learning-assisted visualization for live-cell images. IEEE International Conference on Image Processing.
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.
Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq M.Mozammel, R. Sack B, Colwell RR, Huq A.  2017.  Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh. Frontiers in Microbiology.
Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq M.Mozammel, R. Sack B, Colwell RR, Huq A.  2017.  Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh. Frontiers in Microbiology.
Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq M.Mozammel, R. Sack B, Colwell RR, Huq A.  2017.  Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh. Frontiers in Microbiology.
Jumat M, Hasan N, Subramanian P, Heberling C, Colwell RR, Hong P-Y.  2017.  Membrane Bioreactor-Based Wastewater Treatment Plant in Saudi Arabia: Reduction of Viral Diversity, Load, and Infectious Capacity. Water. 96046Volume 70(7):534.
Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al..  2017.  The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)
Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al..  2017.  The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)
Connelly S., Bristol J.A., Hubert S., Subramanian P., Hasan N.A., Colwell RR, Kaleko M..  2017.  SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model. Journal of Applied Microbiology. (1Suppl 11):66-79.
2018
Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A et al..  2018.  Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary. mBio. (2):e00483-18.
Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A et al..  2018.  Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary. mBio. (2):e00483-18.
Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A et al..  2018.  Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary. mBio. (2):e00483-18.

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