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Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M et al..  2012.  GAGE: A Critical Evaluation of Genome Assemblies and Assembly Algorithms. Genome Research. 22(3):557-567.
Parker A, Nau DS, V.S. Subrahmanian.  2005.  Game-tree search with combinatorially large belief states. 19:254-254.
Cohn G, Gupta S, Froehlich J, Larson E, Patel S.  2010.  GasSense: Appliance-Level, Single-Point Sensing of Gas Activity in the Home. Pervasive Computing. 6030:265-282.
Dewey FE, Perez MV, Wheeler MT, Watt C, Spin J, Langfelder P, Horvath S, Hannenhalli S, Cappola TP, Ashley EA.  2011.  Gene Coexpression Network Topology of Cardiac Development, Hypertrophy, and FailureClinical Perspective. Circulation: Cardiovascular GeneticsCirc Cardiovasc Genet. 4(1):26-35.
Kelley DR, Liu B, Delcher AL, Pop M, Salzberg SL.  2012.  Gene Prediction with Glimmer for Metagenomic Sequences Augmented by Classification and Clustering. Nucleic Acids ResearchNucl. Acids Res.. 40(1):e9-e9-e9-e9.
Shah R, Lu Y, Hinkle CC, McGillicuddy FC, Kim R, Hannenhalli S, Cappola TP, Heffron S, Wang XM, Mehta NN et al..  2009.  Gene Profiling of Human Adipose Tissue During Evoked Inflammation In Vivo. DiabetesDiabetes. 58(10):2211-2219.
Bellam S, Gupta SK, Priyadarshi AK.  2002.  Generating 3D Models of MEMS Devices by Process Emulation. ISR; TR 2002-57
Priyadarshi AK, Gupta SK.  2007.  Generating Multi-Stage Molding Plans for Articulated Assemblies. :56-63.
Peng X, Mount SM.  1995.  Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Molecular and Cellular BiologyMol. Cell. Biol.. 15(11):6273-6282.
Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly M M, Brown IH, Couacy-Hymann E, De Mia G M, Dung D H et al..  2007.  Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses. Emerging Infectious DiseasesEmerg Infect Dis. 13(5):713-718.
Phillippy AM, Schatz MC, Pop M.  2008.  Genome assembly forensics: finding the elusive mis-assembly. Genome Biology. 9(3):R55-R55.
Phillippy AM, Schatz MC, Pop M.  2008.  Genome assembly forensics: finding the elusive mis-assembly. Genome Biology. 9(3):R55-R55.
Pop M.  2009.  Genome Assembly Reborn: Recent Computational Challenges. Briefings in Bioinformatics. 10(4):354-366.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Pop M, Salzberg SL, Shumway M.  2002.  Genome Sequence Assembly: Algorithms and Issues. Computer. 35(7):47-54.
Hannenhalli S, Chappey C, Koonin EV, Pevzner PA.  1995.  Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case. Genomics. 30(2):299-311.
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H|[eacute]|, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423(6935):81-86.
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H|[eacute]|, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423(6935):81-86.
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H|[eacute]|, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423(6935):81-86.
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H|[eacute]|, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423(6935):81-86.
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H|[eacute]|, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423(6935):81-86.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.

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