Publications

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Journal Articles
Esteves K, Hervio-Heath D, Mosser T, Rodier C, Tournoud M-G, Jumas-Bilak E, Colwell RR, Monfort P.  2015.  Rapid Proliferation of Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae during Freshwater Flash Floods in French Mediterranean Coastal Lagoons. Applied and Environmental Microbiology. (21):7600-7609.
Elgot-Drapkin JJ, Perlis D.  1990.  Reasoning situated in time I: Basic concepts. Journal of Experimental and Theoretical Artificial Intellige. 2(1):75-98.
Elman H.  1989.  Relaxed and stabilized incomplete factorizations for non-self-adjoint linear systems. BIT Numerical Mathematics. 29(4):890-915.
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al..  2006.  Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection. PLoS PathogPLoS Pathog. 2(6):e60-e60.
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S et al..  2006.  Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection. PLoS PathogPLoS Pathog. 2(6):e60-e60.
Nahar S, Sultana M, Naser NM, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, Sack BR et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260
Bringaud F, Ghedin E, El-Sayed NM, Papadopoulou B.  2008.  Role of transposable elements in trypanosomatids. Microbes and Infection. 10(6):575-581.
Edjlali G, Agrawal G, Sussman A, Humphries J, Saltz J.  1997.  Run-time and compiler support for programming in adaptive parallel environments. Scientific Programming. 6(2):215-227.
Haas BJ, Berriman M, Hirai H, Cerqueira GG, LoVerde PT, El-Sayed NM.  2007.  Schistosoma mansoni genome: Closing in on a final gene set. Experimental Parasitology. 117(3):225-228.
LoVerde PT, Hirai H, Merrick JM, Lee NH, El-Sayed NM.  2004.  Schistosoma mansoni genome project: an update. Parasitology International. 53(2):183-192.
Wu W, Niles EG, El-Sayed NM, Berriman M, LoVerde PT.  2006.  Schistosoma mansoni (Platyhelminthes, Trematoda) nuclear receptors: Sixteen new members and a novel subfamily. Gene. 366(2):303-315.
El-Sayed NM, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic acids research. 31(16):4856-4856.
Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado C R, El-Sayed NM, Teixeira SMR.  2008.  Sequence diversity and evolution of multigene families in Trypanosoma cruzi. Molecular and Biochemical Parasitology. 157(1):65-72.
Bartholomeu D, El-Sayed NM, Melville SE.  2004.  Sequencing Strategies for Parasite Genomes. METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-. 270:1-16.
Salzberg SL, Hotopp J CD, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC.  2005.  Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biology. 6(3):R23-R23.
Alam M, Chowdhury WB, Bhuiyan NA, Islam A, Hasan NA, Nair BG, Watanabe H, Siddique AK, Huq A, Sack BR et al..  2009.  Serogroup, Virulence, and Genetic Traits of Vibrio Parahaemolyticus in the Estuarine Ecosystem of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75(19):6268-6274.
Patel VM, Easley GR, Healy DM.  2009.  Shearlet-Based Deconvolution. IEEE Transactions on Image Processing. 18(12):2673-2685.
Elman H, Furnival D.  2007.  Solving the stochastic steady-state diffusion problem using multigrid. IMA journal of numerical analysis. 27(4):675-675.
Babuska I, Elman H.  1989.  Some aspects of parallel implementation of the finite-element method on message passing architectures. Journal of Computational and Applied Mathematics. 27(1-2):157-187.
Ramage A, Elman H.  2007.  Some observations on multigrid convergence for convection–diffusion equations. Computing and Visualization in Science. 10(1):43-56.
Carlson CJ, Getz WM, Kausrud KL, Cizauskas CA, Blackburn JK, Carrillo FABustos, Colwell RR, W. Easterday R, Ganz HH, Kamath PL et al..  2018.  Spores and soil from six sides: interdisciplinarity and the environmental biology of anthrax (Bacillus anthracis). Biological Reviews. (4):1813-1831.
Elman H.  1986.  A Stability Analysis of Incomplete LU Factorizations. Mathematics of Computation. 47(175):191-217.
Perlis D, Elgot-Drapkin JJ, Miller M.  1991.  Stop the world—I want to think. International Journal of Intelligent Systems. 6(4):443-456.
Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS et al..  2012.  Structure, function and diversity of the healthy human microbiome. Nature. 486:207-214.
Eubank S, Kumar VSA, Marathe MV, Srinivasan A, Wang N.  2006.  Structure of social contact networks and their impact on epidemics. DIMACS Series in Discrete Mathematics and Theoretical Computer Science. 70:181-181.

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