Publications
2010. MetaPhyler: Taxonomic profiling for metagenomic sequences. 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). :95-100.
2009. Inexact Local Alignment Search over Suffix Arrays. IEEE International Conference on Bioinformatics and Biomedicine, 2009. BIBM '09. :83-87.
2008. Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5(4):482-483.
2008. Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques. IEEE International Conference on Bioinformatics and Biomedicine, 2008. BIBM '08. :223-230.
2007. Structural Biology: Analysis of 'downhill' protein folding; Analysis of protein-folding cooperativity (Reply). Nature. 445(7129):E17-E18-E17-E18.
2006. Knowledge discovery in high-dimensional data: case studies and a user survey for the rank-by-feature framework. IEEE Transactions on Visualization and Computer Graphics. 12(3):311-322.
2003. Dynamic querying for pattern identification in microarray and genomic data. 2003 International Conference on Multimedia and Expo, 2003. ICME '03. Proceedings. 3:III-453-6vol.3-III-453-6vol.3.
2002. Interactively exploring hierarchical clustering results [gene identification]. Computer. 35(7):80-86.
1997. Hardness of flip-cut problems from optical mapping [DNA molecules application]. Compression and Complexity of Sequences 1997. Proceedings. :275-284.