2017

(Publications for 2017 are listed alphabetically by title)

Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq M.Mozammel, R. Sack B, Colwell RR, Huq A. 2017. Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh. Frontiers in Microbiology.

Florczyk SJ, Simon M, Juba D, P. Pine S, Sarkar S, Chen D, Baker PJ, Bodhak S, Cardone A, Brady MC et al.. 2017. A Bioinformatics 3D Cellular Morphotyping Strategy for Assessing Biomaterial Scaffold Niches. ACS Biomaterials Science & Engineering. 3(10):2302-2313.

Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron J-L, Huq A, Rashed S et al.. 2017. Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti. Journal of Microbiological Methods. 133:23-31.

Huq A, Anwar R, Colwell RR, McDonald MD, Khan R, Jutla A, Akanda S. 2017. Assessment of Risk of Cholera in Haiti following Hurricane Matthew. The American Journal of Tropical Medicine and Hygiene. 97(3):896-903.

Phelps C, Madhavan G, Rappuoli R, Colwell RR, Fineberg H. 2017. Beyond cost-effectiveness: Using systems analysis for infectious disease preparedness. Vaccine. 35:A46-A49.

Leddy MB, Hasan NA, Subramanian P, Heberling C, Cotruvo J, Colwell RR. 2017. Characterization of Microbial Signatures From Advanced Treated Wastewater Biofilms. Journal - American Water Works Association. 109:E503-E512.

Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A. 2017. Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland. Frontiers in Microbiology.

Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR. 2017. Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139. Frontiers in Microbiology.

Khajanchi BK, Hasan NA, Choi SYoung, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL. 2017. Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources. BMC Genomics.

Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR et al.. 2017. Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. mBio. (4)

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al.. 2017. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)

Carpenter MR, Kalburge SS, Borowski JD, Peters MC, Colwell RR, E. Boyd F. 2017. CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules. Journal of Bacteriology. (10)

Cheng H-C, Cardone A, Krokos E, Stoica B, Faden A, Varshney A. 2017. Deep-learning-assisted visualization for live-cell images. IEEE International Conference on Image Processing.

Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al.. 2017. Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.

Nasr-Azadani F, Khan R, Rahimikollu J, Unnikrishnan A, Akanda A, Alam M, Huq A, Jutla A, Colwell RR. 2017. Hydroclimatic sustainability assessment of changing climate on cholera in the Ganges-Brahmaputra basin. Advances in Water Resources. 108:332-344.

Cheng H-C, Cardone A, Varshney A. 2017. Interactive exploration of microstructural features in gigapixel microscopy images. IEEE International Conference on Image Processing.

Jumat M, Hasan N, Subramanian P, Heberling C, Colwell RR, Hong P-Y. 2017. Membrane Bioreactor-Based Wastewater Treatment Plant in Saudi Arabia: Reduction of Viral Diversity, Load, and Infectious Capacity. Water. 96046Volume 70(7):534.

Jutla A, Khan R, Colwell RR. 2017. Natural Disasters and Cholera Outbreaks: Current Understanding and Future Outlook. Current Environmental Health Reports. (1Suppl 1):99-107.

Connelly S., Bristol J.A., Hubert S., Subramanian P., Hasan N.A., Colwell RR, Kaleko M.. 2017. SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model. Journal of Applied Microbiology. (1Suppl 11):66-79.

Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al.. 2017. The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)