Publications

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Submitted
Papamanthou C, Tamassia R, Triandopoulos N.  Submitted.  System and Method for Optimal Verification of Operations on Dynamic Sets.
Papamanthou C, Tamassia R, Triandopoulos N.  Submitted.  System and Method for Optimal Verification of Operations on Dynamic Sets.
2019
Al-Hebshi NNoor, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hassan NA, Colwell RR, Ismail A.  2019.  Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children. Journal of Oral Microbiology. (118):1557986.
2018
Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R et al..  2018.  Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments. Frontiers in Microbiology.
Kaboré S, Cecchi P, Mosser T, Toubiana M, Traoré O, Ouattara AS, Traoré AS, Barro N, Colwell RR, Monfort P.  2018.  Occurrence of Vibrio cholerae in water reservoirs of Burkina Faso. Research in Microbiology. 169(1):1-10.
Kaboré S, Cecchi P, Mosser T, Toubiana M, Traoré O, Ouattara AS, Traoré AS, Barro N, Colwell RR, Monfort P.  2018.  Occurrence of Vibrio cholerae in water reservoirs of Burkina Faso. Research in Microbiology. 169(1):1-10.
Kaboré S, Cecchi P, Mosser T, Toubiana M, Traoré O, Ouattara AS, Traoré AS, Barro N, Colwell RR, Monfort P.  2018.  Occurrence of Vibrio cholerae in water reservoirs of Burkina Faso. Research in Microbiology. 169(1):1-10.
Carlson CJ, Getz WM, Kausrud KL, Cizauskas CA, Blackburn JK, Carrillo FABustos, Colwell RR, W. Easterday R, Ganz HH, Kamath PL et al..  2018.  Spores and soil from six sides: interdisciplinarity and the environmental biology of anthrax (Bacillus anthracis). Biological Reviews. (4):1813-1831.
2017
Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.  2017.  Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland. Frontiers in Microbiology.
Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.  2017.  Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland. Frontiers in Microbiology.
Ranjan A, Shaik S, Nandanwar N, Hussain A, Tiwari SK, Semmler T, Jadhav S, Wieler LH, Alam M, Colwell RR et al..  2017.  Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. mBio. (4)
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.
2016
Ponnusamy D, Kozlova EV, Sha J, Erova TE, Azar SR, Fitts EC, Kirtley ML, Tiner BL, Andersson JA, Grim CJ et al..  2016.  Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis. Proceedings of the National Academy of Sciences. 11312161268(3321029):722-727.
2015
Hasan NA, Grim CJ, Lipp EK, Rivera ING, Chun J, Haley BJ, Taviani E, Choi SYoung, Hoq M, A. Munk C et al..  2015.  Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences. (2144666966517):E2813-E2819.
Hill VR, Humphrys MS, Kahler AM, Boncy J, Tarr CL, Huq A, Chen A, Katz LS, Mull BJ, Derado G et al..  2015.  Environmental Surveillance for Toxigenic Vibrio cholerae in Surface Waters of Haiti. The American Journal of Tropical Medicine and Hygiene. 92(1):118-125.
Hill VR, Humphrys MS, Kahler AM, Boncy J, Tarr CL, Huq A, Chen A, Katz LS, Mull BJ, Derado G et al..  2015.  Environmental Surveillance for Toxigenic Vibrio cholerae in Surface Waters of Haiti. The American Journal of Tropical Medicine and Hygiene. 92(1):118-125.
Klinzing DC, Choi SYoung, Hasan NA, Matias RR, Tayag E, Geronimo J, Skowronski E, Rashed SM, Kawashima K, C. Rosenzweig N et al..  2015.  Hybrid Vibrio cholerae El Tor Lacking SXT Identified as the Cause of a Cholera Outbreak in the Philippines. mBio. (2)
Klinzing DC, Choi SYoung, Hasan NA, Matias RR, Tayag E, Geronimo J, Skowronski E, Rashed SM, Kawashima K, C. Rosenzweig N et al..  2015.  Hybrid Vibrio cholerae El Tor Lacking SXT Identified as the Cause of a Cholera Outbreak in the Philippines. mBio. (2)
Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N et al..  2015.  Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia. Frontiers in Public Health.
Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N et al..  2015.  Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia. Frontiers in Public Health.
Esteves K, Hervio-Heath D, Mosser T, Rodier C, Tournoud M-G, Jumas-Bilak E, Colwell RR, Monfort P.  2015.  Rapid Proliferation of Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae during Freshwater Flash Floods in French Mediterranean Coastal Lagoons. Applied and Environmental Microbiology. (21):7600-7609.
Alivisatos A.P, Blaser M.J, Brodie E.L, Chun M., Dangl J.L, Donohue T.J, Dorrestein P.C, Gilbert J.A, Green J.L, Jansson J.K et al..  2015.  A unified initiative to harness Earth's microbiomes. Science. (62607551614341176):507-508.
Zaitchik B.F, Guikema S.D, Haley B.J, Taviani E., Chen A., Brown M.E., Huq A., Colwell RR.  2015.  Use of Environmental Parameters to Model Pathogenic Vibrios in Chesapeake Bay. Journal of Environmental Informatics.

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