Publications

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2018
Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R et al..  2018.  Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments. Frontiers in Microbiology.
2017
Briquaire R, Colwell RR, Boncy J, Rossignol E, Dardy A, Pandini I, Villeval F, Machuron J-L, Huq A, Rashed S et al..  2017.  Application of a paper based device containing a new culture medium to detect Vibrio cholerae in water samples collected in Haiti. Journal of Microbiological Methods. 133:23-31.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S et al..  2017.  Comprehensive benchmarking and ensemble approaches for metagenomic classifiers. Genome Biology. (1210)
Carpenter MR, Kalburge SS, Borowski JD, Peters MC, Colwell RR, E. Boyd F.  2017.  CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules. Journal of Bacteriology. (10)
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S et al..  2017.  Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques : JBT. 28(1):31-39.
Junqueira AC, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE et al..  2017.  The microbiomes of blowflies and houseflies as bacterial transmission reservoirs. Scientific Reports. (1)
2016
Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N et al..  2016.  Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak. BMC Microbiology.
2015
Hasan NA, Grim CJ, Lipp EK, Rivera ING, Chun J, Haley BJ, Taviani E, Choi SYoung, Hoq M, A. Munk C et al..  2015.  Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences. (2144666966517):E2813-E2819.
Hill VR, Humphrys MS, Kahler AM, Boncy J, Tarr CL, Huq A, Chen A, Katz LS, Mull BJ, Derado G et al..  2015.  Environmental Surveillance for Toxigenic Vibrio cholerae in Surface Waters of Haiti. The American Journal of Tropical Medicine and Hygiene. 92(1):118-125.
Alivisatos A.P, Blaser M.J, Brodie E.L, Chun M., Dangl J.L, Donohue T.J, Dorrestein P.C, Gilbert J.A, Green J.L, Jansson J.K et al..  2015.  A unified initiative to harness Earth's microbiomes. Science. (62607551614341176):507-508.
Alivisatos A.P, Blaser M.J, Brodie E.L, Chun M., Dangl J.L, Donohue T.J, Dorrestein P.C, Gilbert J.A, Green J.L, Jansson J.K et al..  2015.  A unified initiative to harness Earth's microbiomes. Science. (62607551614341176):507-508.
Alivisatos A.P, Blaser M.J, Brodie E.L, Chun M., Dangl J.L, Donohue T.J, Dorrestein P.C, Gilbert J.A, Green J.L, Jansson J.K et al..  2015.  A unified initiative to harness Earth's microbiomes. Science. (62607551614341176):507-508.
2014
Dachman-Soled D, Mahmoody M, Malkin T.  2014.  Can Optimally-Fair Coin Tossing Be Based on One-Way Functions? Theory of Cryptography. :217-239.
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
Dachman-Soled D.  2014.  On Minimal Assumptions for Sender-Deniable Public Key Encryption. Public-Key Cryptography – PKC 2014. :574-591.
Alam M, Rashed SM, Bin Mannan S, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JLuis, Navarro A, Watanabe H et al..  2014.  Occurrence in Mexico, 1998–2008, of Vibrio cholerae CTX + El Tor carrying an additional truncated CTX prophage. Proceedings of the National Academy of Sciences. 111(27):9917-9922.
2013
Dachman-Soled D, Malkin T, Raykova M, Venkitasubramaniam M.  2013.  Adaptive and Concurrent Secure Computation from New Adaptive, Non-malleable Commitments. Advances in Cryptology - ASIACRYPT 2013. :316-336.
Findlater L, Froehlich J, Fattal K, Wobbrock JO, Dastyar T.  2013.  Age-Related Differences in Performance with Touchscreens Compared to Traditional Mouse Input. CHI 2013 To Appear.
Agrawal M, Doermann D.  2013.  Clutter noise removal in binary document images. International Journal on Document Analysis and Recognition (IJDAR). 16(4):351-369.
Preston ND, Daszak P, Colwell RR.  2013.  Current Topics in Microbiology and Immunology One Health: The Human-Animal-Environment Interfaces in Emerging Infectious Diseases The Human Environment Interface: Applying Ecosystem Concepts to Health. 365:83-100.
Preston ND, Daszak P, Colwell RR.  2013.  Current Topics in Microbiology and Immunology One Health: The Human-Animal-Environment Interfaces in Emerging Infectious Diseases The Human Environment Interface: Applying Ecosystem Concepts to Health. 365:83-100.
Kumar J, Ye P, Doermann D.  2013.  A Dataset for Quality Assessment of Camera Captured Document Images.
Ye P, Doermann D.  2013.  Document Image Quality Assessment: A Brief Survey. International Conference on Document Analysis and Recognition (ICDAR).
Clements JD, Connell ND, Dirks C, El-Faham M, Hay A, Heitman E, Stith JH, Bond EC, Colwell RR, Anestidou L et al..  2013.  Engaging Actively with Issues in the Responsible Conduct of Science: Lessons from International Efforts Are Relevant for Undergraduate Education in the United States. CBE—Life Sciences Education. (4):596-603.

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