Publications

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Reports
Lam H, Bertini E, Isenberg P, Plaisant C, Carpendale S.  2011.  Seven guiding scenarios for information visualization evaluation. 2011-992-04
Ilghami O, Nau DS.  2003.  A General Approach to Synthesize Problem-Specific Planners.
Patents
Andrews M, Hofmann M, Shepherd B, Srinivasan A, Winkler P, Zane F.  2006.  System and method for locating a closest server in response to a client .... 09/726,192(7020698)
Aravamudan M, Kumaran K, Ramakrishnan K G, Srinivasan A.  2004.  Method of designing signaling networks for internet telephony. : 09/517,658(6687363)
Fleischer L K, Saniee I, Shepherd F B, Srinivasan A.  2007.  Fast and scalable approximation methods for finding minimum cost flows with .... 10/053,079(7280526)
Vishkin U.  2010.  Computer Memory Architecture for Hybrid Serial and Parallel Computing Systems. 12/721,252
Journal Articles
Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR et al..  2004.  Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101(7):1916-1916.
Caprara A, Italiano GF, Mohan G, Panconesi A, Srinivasan A.  2002.  Wavelength rerouting in optical networks, or the Venetian Routing problem. Journal of Algorithms. 45(2):93-125.
Jutla A, Akanda AShafqat, Huq A, Faruque ASyed Golam, Colwell RR, Islam S.  2013.  A water marker monitored by satellites to predict seasonal endemic cholera. Remote Sensing Letters. 4472741982394456(8):822-831.
Jutla AS, Akanda AS, Griffiths JK, Colwell RR, Islam S.  2011.  Warming Oceans, Phytoplankton, and River Discharge: Implications for Cholera Outbreaks. The American Journal of Tropical Medicine and Hygiene. 85(2):303-308.
Hossain M, Alam M, Khaleque A, Islam S, Sadique A, Khan N, Halim Z, Sarker M, El-Sayed NM, Huq A et al..  2018.  Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh. Genome Announcements. (10)
Islam MS, Talukder KA, Khan NH, Mahmud ZH, Rahman MZ, Nair GB, Siddique AKM, Yunus M, Sack DA, Sack RB et al..  2004.  Variation of toxigenic Vibrio cholerae O1 in the aquatic environment of Bangladesh and its correlation with the clinical strains. Microbiology and immunology. 48(10):773-777.
Parker A, Infantes G, Grant J, V.S. Subrahmanian.  2009.  SPOT Databases: Efficient Consistency Checking and Optimistic Selection in Probabilistic Spatial Databases. Knowledge and Data Engineering, IEEE Transactions on. 21(1):92-107.
Patro R, Ip C Y, Bista S, Varshney A.  2011.  Social Snapshot: A System for Temporally Coupled Social Photography. Computer Graphics and Applications, IEEE. 31(1):74-84.
Nau DS, Au TC, Ilghami O, Kuter U, Murdock JW, Wu D, Yaman F.  2003.  SHOP2: An HTN planning system. J. Artif. Intell. Res. (JAIR). 20:379-404.
Alam M, Chowdhury WB, Bhuiyan NA, Islam A, Hasan NA, Nair BG, Watanabe H, Siddique AK, Huq A, Sack BR et al..  2009.  Serogroup, Virulence, and Genetic Traits of Vibrio Parahaemolyticus in the Estuarine Ecosystem of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75(19):6268-6274.
Baker K, Bethard S, Bloodgood M, Brown R, Callison-Burch C, Coppersmith G, Dorr BJ, Filardo W, Giles K, Irvine A et al..  2009.  Semantically informed machine translation (SIMT). SCALE summer workshop final report, Human Language Technology Center Of Excellence.
Kim Y, Patro R, Ip CY, O’Leary DP, Anishkin A, Sukharev S, Varshney A.  1998.  Salient Frame Detection for Molecular Dynamics Simulations. Scientific Visualization: Interactions, Features, Metaphors. 2:160-175.
Ip C Y, Varshney A.  2011.  Saliency-Assisted Navigation of Very Large Landscape Images. Visualization and Computer Graphics, IEEE Transactions on. 17(12):1737-1746.
Patro R, Ip CY, Varshney A, Hagen H.  2010.  Saliency Guided Summarization of Molecular Dynamics Simulations. Scientific Visualization: Advanced Concepts. 1:321-335.
Grim CJ, Zo Y-G, Hasan NA, Ali A, Chowdhury WB, Islam A, Rashid MH, Alam M, Morris GJ, Huq A et al..  2009.  RNA Colony Blot Hybridization Method for Enumeration of Culturable Vibrio Cholerae and Vibrio Mimicus Bacteria. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75(17):5439-5444.
Ip CY, Gupta SK.  2007.  Retrieving matching CAD models by using partial 3D point clouds. Computer-Aided Design & Applications. 4(5):629-638.
Colwell RR, Huq A, Islam SM, Aziz KMA, Yunus M, Khan HN, Mahmud A, Sack BR, Nair GB, Chakraborty J et al..  2003.  Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNAS. 100(3):1051-1055.
Cleaveland R, Iyer PS, Narasimha M.  2005.  Probabilistic temporal logics via the modal mu-calculus. Theoretical Computer Science. 342(2-3):316-350.
Hajiaghayi MT, Immorlica N, Mirrokni VS.  2007.  Power optimization in fault-tolerant topology control algorithms for wireless multi-hop networks. IEEE/ACM Transactions on Networking (TON). 15(6):1345-1358.

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