Publications

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2007
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-218.
Sankaranarayanan J, Samet H, Varshney A.  2007.  A fast all nearest neighbor algorithm for applications involving large point-clouds. Computers & Graphics. 31(2):157-174.
Ramachandran M, Veeraraghavan A, Chellappa R.  2007.  Fast Bilinear SfM with Side Information. Computer Vision, 2007. ICCV 2007. IEEE 11th International Conference on. :1-8.
Ramachandran A, Feamster N, Vempala S.  2007.  Filtering spam with behavioral blacklisting. Proceedings of the 14th ACM conference on Computer and communications security. :342-351.
Turaga PK, Veeraraghavan A, Chellappa R.  2007.  From Videos to Verbs: Mining Videos for Activities using a Cascade of Dynamical Systems. Computer Vision and Pattern Recognition, 2007. CVPR '07. IEEE Conference on. :1-8.
Yang S, Wang K, Valladares O, Hannenhalli S, Bucan M.  2007.  Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. Genome Biology. 8(11):R247-R247.
Schatz MC, Trapnell C, Delcher AL, Varshney A.  2007.  High-throughput sequence alignment using Graphics Processing Units. BMC Bioinformatics. 8(1):474-474.
Hussein M, Varshney A, Davis LS.  2007.  On implementing graph cuts on cuda. First Workshop on General Purpose Processing on Graphics Processing Units.
Balkan AO, Horak MN, Qu G, Vishkin U.  2007.  Layout-Accurate Design and Implementation of a High-Throughput Interconnection Network for Single-Chip Parallel Processing. High-Performance Interconnects, 2007. HOTI 2007. 15th Annual IEEE Symposium on. :21-28.
Juba D, Varshney A.  2007.  Modelling and rendering large volume data with gaussian radial basis functions. UMIACS-TR-2007-22
Vishkin U, Caragea GC, Lee B.  2007.  Models for advancing PRAM and other algorithms into parallel programs for a PRAM-On-Chip platform. IN HANDBOOK OF PARALLEL COMPUTING: MODELS, ALGORITHMS AND APPLICATIONS, EDITORS.
Valancius V, Feamster N.  2007.  Multiplexing BGP sessions with BGP-Mux. Proceedings of the 2007 ACM CoNEXT conference. :44:1–44:2-44:1–44:2.
Danovaro E, De Floriani L, Vitali M.  2007.  Multi-resolution Morse-Smale Complexes for Terrain Modeling. Image Analysis and Processing, 2007. ICIAP 2007. 14th International Conference on. :337-342.
Danovaro E, De Floriani L, Vitali M, Magillo P.  2007.  Multi-scale dual morse complexes for representing terrain morphology. Proceedings of the 15th annual ACM international symposium on Advances in geographic information systems. :29:1–29:8-29:1–29:8.
Motiwala M, Feamster N, Vempala S.  2007.  Path splicing: Reliable connectivity with rapid recovery. ACM SIGCOMM HotNets VI.
Feamster N, Motiwala M, Vempala S.  2007.  Path splicing with network slicing. Proc. ACM SIGCOMM Hot-Nets.
Stantchev G, Juba D, Dorland W, Varshney A.  2007.  Plasma Turbulence Simulation and Visualization on Graphics Processors: Efficient Parallel Computing on the Desktop. Bulletin of the American Physical Society. Volume 52, Number 11
Vishkin U, Smolyaninov I, Davis C.  2007.  Plasmonics and the parallel programming problem. Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series. 6477:19-19.
Vardhanabhuti S, Wang J, Hannenhalli S.  2007.  Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation. Nucleic Acids Research. 35(10):3203-3213.
Wen X, Vishkin U.  2007.  PRAM-on-chip: first commitment to silicon. Proceedings of the nineteenth annual ACM symposium on Parallel algorithms and architectures. :301-302.

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