Publications

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Journal Articles
Coolahan JE, Roussopoulos N.  1983.  Timing Requirements for Time-Driven Systems Using Augmented Petri Nets. IEEE Transactions on Software Engineering. SE-9(5):603-616.
Zhang D, Chen T, Ziv I, Rosenzweig R, Matiuhin Y, Bronner V, Glickman MH, Fushman D.  2009.  Together, Rpn10 and Dsk2 Can Serve as a Polyubiquitin Chain-Length Sensor. Molecular Cell. 36(6):1018-1033.
Montemayor J, Druin A, Chipman G, Farber A, Guha ML.  2004.  Tools for children to create physical interactive storyrooms. Computers in Entertainment (CIE). 2(1):12-12.
Mylopoulos J, Borgida A, Cohen P, Roussopoulos N, Tsotsos J, Wong H.  1976.  TORUS: A step towards bridging the gap between data bases and the casual user. Information Systems. 2(2):49-64.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Martin, M.P, Weirs G, Candler GV, Piomelli U, Johnson H, Nompelis I.  2000.  Toward the large-eddy simulation over a hypersonic elliptical cross-section cone. AIAA Paper No. 00-2311.
Alam M, Sultana M, Nair BG, Sack BR, Sack DA, Siddique AK, Ali A, Huq A, Colwell RR.  2006.  Toxigenic Vibrio Cholerae in the Aquatic Environment of Mathbaria, Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72(4):2849-2855.
Shao J, Zhou SK, Chellappa R.  2005.  Tracking Algorithm Using Background-Foreground Motion Models and Multiple Cues. ICASSP apos. :233-236.
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, El-Sayed NM, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non‐lethal cold shock. Environmental Microbiology. 7(6):789-797.
Snellman EA, Colwell RR.  2008.  Transesterification activity of a novel lipase from Acinetobacter venetianus RAG-1. Antonie van Leeuwenhoek. 94(4):621-625.
Cummings MP.  1994.  Transmission patterns of eukaryotic transposable elements - arguments for and against horizontal transfer. Trends Ecol Evol. 9(4):141-145.
Čomić L, De Floriani L.  2009.  Tree-Based Encoding for Cancellations on Morse Complexes. Combinatorial Image Analysis. :330-343.
Nguyen VA, Boyd-Graber J, Chang J, Resnik P.  Submitted.  Tree-based Label Dependency Topic Models. cs.umd.edu.
Tilghman S, Astin HS, Brinkley W, Chilton MD, Cummings MP, Ehrenberg RG, Fox MF, Glenn K, Green PJ, Hans S et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol Cell. 9(11):3007-3015.
Tilghman S, Astin HS, Brinkley W, Chilton MD, Cummings MP, Ehrenberg RG, Fox MF, Glenn K, Green PJ, Hans S et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol Cell. 9(11):3007-3015.
Sengupta B, Cleaveland R.  2002.  Triggered message sequence charts. ACM SIGSOFT Software Engineering Notes. 27:167-167.
Westenberger S, Cerqueira G, El-Sayed NM, Zingales B, Campbell D, Sturm N.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC Genomics. 7(1):60-60.
Westenberger S, Cerqueira G, El-Sayed NM, Zingales B, Campbell D, Sturm N.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC Genomics. 7(1):60-60.
Wong PC, Chen C, Görg C, Shneiderman B, Stasko J, Thomas J.  2011.  Tutorial-Graph Analytics — Lessons Learned and Challenges Ahead. IEEE Computer Graphics and Applications. 31(5):18-18.
Cleaveland R, Panangaden P.  1988.  Type theory and concurrency. International Journal of Parallel Programming. 17(2):153-206.
Verma R, Peters NR, D'Onofrio M, Tochtrop GP, Sakamoto KM, Varadan R, Zhang M, Coffino P, Fushman D, Deshaies RJ et al..  2004.  Ubistatins Inhibit Proteasome-Dependent Degradation by Binding the Ubiquitin Chain. Science. 306(5693):117-120.
Chaiyanan S, Chaiyanan S, Grim C, Maugel T, Huq A, Colwell RR.  2007.  Ultrastructure of coccoid viable but non‐culturable Vibrio cholerae. Environmental Microbiology. 9(2):393-402.
Chaiyanan S, Chaiyanan S, Grim C, Maugel T, Huq A, Colwell RR.  2007.  Ultrastructure of coccoid viable but non‐culturable Vibrio cholerae. Environmental Microbiology. 9(2):393-402.

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