Publications

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Journal Articles
Preece J, Shneiderman B.  1995.  Survival of the fittest: the evolution of multimedia user interfaces. ACM Computing Surveys. 27(4):557-559.
Bajcsy P, Cardone A, Chalfoun J, Halter M, Juba D, Kociolek M, Majurski M, Peskin A, Simon C, Simon M et al..  2015.  Survey statistics of automated segmentations applied to optical imaging of mammalian cells. BMC bioinformatics. 16:1.
Lopez JV, Ledger A, Santiago-Vázquez LZ, Pop M, Sommer DD, Ranzer LK, Feldman RA, Russell GK.  2011.  Suppression subtractive hybridization PCR isolation of cDNAs from a Caribbean soft coral. Electronic Journal of Biotechnology. 14(1):8-9.
Pei J, Getoor L, de Keijzer A.  2010.  Summary of the first ACM SIGKDD workshop on knowledge discovery from uncertain data (U'09). ACM SIGKDD Explorations Newsletter. 11(2):90-91.
Martin, M.P, Piomelli U, Candler GV.  2000.  Subgrid-scale models for compressible large-eddy simulations. Theoretical and Computational Fluid Dynamics. 13(5):361-376.
Varadan R, Walker O, Pickart C, Fushman D.  2002.  Structural Properties of Polyubiquitin Chains in Solution. Journal of Molecular Biology. 324(4):637-647.
Zotenko E, Dogan R I, Wilbur JW, O'Leary DP, Przytycka TM.  2007.  Structural Footprinting in Protein Structure Comparison: The Impact of Structural Fragments. BMC Structural Biology. 7(53)
Varadan R, Assfalg M, Raasi S, Pickart C, Fushman D.  2005.  Structural Determinants for Selective Recognition of a Lys48-Linked Polyubiquitin Chain by a UBA Domain. Molecular Cell. 18(6):687-698.
Cardone A, Hassan SA, Albers RW, Sriram RD, Pant HC.  2010.  Structural and dynamic determinants of ligand binding and regulation of cyclin-dependent kinase 5 by pathological activator p25 and inhibitory peptide CIP.. Journal of molecular biology. 401(3):478-92.
Phelps C, Madhavan G, Rappuoli R, LEVIN SCOTT, Shortlife E, Colwell RR.  2016.  Strategic Planning in Population Health and Public Health Practice: A Call to Action for Higher Education. The Milbank Quarterly. 94906033(143S2):109-125.
Clement T, Plaisant C, Vuillemot R.  2009.  The Story of One: Humanity scholarship with visualization and text analysis. Relation. 10(1.43):8485-8485.
Fayzullin M, V.S. Subrahmanian, Albanese M, Cesarano C, Picariello A.  2007.  Story creation from heterogeneous data sources. Multimedia Tools and Applications. 33(3):351-377.
Perlis D, Elgot-Drapkin JJ, Miller M.  1991.  Stop the world—I want to think. International Journal of Intelligent Systems. 6(4):443-456.
Rand W, Brown DG, Page SE, Riolo R, Fernandez LE, Zellner M.  2003.  Statistical validation of spatial patterns in agent-based models. Proceedings of Agent Based Simulation. 4
White J R, Nagarajan N, Pop M.  2009.  Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput Biology. 5(4):e1000352-e1000352.
Pugh W, Wonnacott D.  1994.  Static analysis of upper and lower bounds on dependences and parallelism. ACM Transactions on Programming Languages and SystemsACM Trans. Program. Lang. Syst.. 16(4):1248-1278.
Parker A, Infantes G, Grant J, V.S. Subrahmanian.  2009.  SPOT Databases: Efficient Consistency Checking and Optimistic Selection in Probabilistic Spatial Databases. Knowledge and Data Engineering, IEEE Transactions on. 21(1):92-107.
Padgett RA, Mount SM, Steitz JA, Sharp PA.  1983.  Splicing of messenger RNA precursors is inhibited by antisera to small nuclear ribonucleoprotein. Cell. 35(1):101-107.
Patro R, Dickerson JP, Bista S, Gupta SK, Varshney A.  2012.  Speeding Up Particle Trajectory Simulations under Moving Force Fields using GPUs. Journal of Computing and Information Science in Engineering.
Karl LR, Pettey M, Shneiderman B.  1993.  Speech versus mouse commands for word processing: an empirical evaluation. International Journal of Man-Machine Studies. 39(4):667-687.
Furuta R, Plaisant C, Shneiderman B.  1989.  A spectrum of automatic hypertext constructions. Hypermedia. 1(2):179-195.
Jategaonkar Jagadeesan L, Porter A, Puchol C, Ramming JC, Votta LG.  1998.  Specification-based Testing of Reactive Software: A Case Study in Technology Transfer. Journal of Systems and Software. 40(3):249-262.
Jategaonkar Jagadeesan L, Porter A, Puchol C, Ramming JC, Votta LG.  1998.  Specification-based Testing of Reactive Software: A Case Study in Technology Transfer. Journal of Systems and Software. 40(3):249-262.
Cardone A, Pant H, Hassan SA.  2013.  Specific and Non-Specific Protein Association in Solution: Computation of Solvent Effects and Prediction of First-Encounter Modes for Efficient Configurational Bias Monte Carlo Simulations. The Journal of Physical Chemistry B. 117(41):12360-12374.
Chellappa R, Cavallaro A, Wu Y, Shan C, Fu Y, Pulli K.  2011.  Special Issue on Video Analysis on Resource-Limited Systems. IEEE Transactions on Circuits and Systems for Video Technology. 21(10):1349-1352.

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