Publications

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G
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.. 79(11):6610-6619.
Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.
Daumé H, Echihabi A, Marcu D, Munteanu D, Soricut R.  2002.  GLEANS: A generator of logical extracts and abstracts for nice summaries. Workshop on Automatic Summarization. :9-14.
H
Elman H, Furnival DG, Powell CE.  2008.  H (div) preconditioning for a mixed finite element formulation of the stochastic diffusion problem.
Sundaresan S, Feamster N, Teixeira R, Tang A, W. Edwards K, Grinter RE, Chetty M, de Donato W.  2011.  Helping Users Shop for ISPs with Internet Nutrition Labels. ACM SIGCOMM Workshop on Home Networks '11. :13-18.
Kalluri SNV, Zhang Z, JaJa JF, Bader DA, Song H, El Saleous N, Vermote E, Townshend JRG.  1999.  A hierarchical data archiving and processing system to generate custom tailored products from AVHRR data. Geoscience and Remote Sensing Symposium, 1999. IGARSS '99 Proceedings. IEEE 1999 International. 5:2374-2376vol.5-2374-2376vol.5.
Trivedi CM, Zhu W, Wang Q, Jia C, Kee H J, Li L, Hannenhalli S, Epstein JA.  2010.  Hopx and Hdac2 Interact to Modulate Gata4 Acetylation and Embryonic Cardiac Myocyte Proliferation. Developmental Cell. 19(3):450-459.
Brown JR, van Dam A, Earnshaw R, Encarnacao J, Guedj R, Preece J, Shneiderman B, Vince J.  1999.  Human-centered computing, online communities, and virtual environments. IEEE Computer Graphics and Applications. 19(6):70-74.
Brown JR, van Dam A, Earnshaw R, Encarnacao J, Guedj R, Preece J, Shneiderman B, Vince J.  1999.  Human-centered computing, online communities, and virtual environments. IEEE Computer Graphics and Applications. 19(6):70-74.
Elman H, Saad Y, Saylor PE.  1986.  A Hybrid Chebyshev Krylov Subspace Algorithm for Solving Nonsymmetric Systems of Linear Equations. SIAM Journal on Scientific and Statistical ComputingSIAM J. Sci. and Stat. Comput.. 7(3):840-840.
I
Bringaud F, García-Pérez J L, Heras SR, Ghedin E, El-Sayed NM, Andersson B, Baltz T, Lopez MC.  2002.  Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. Molecular and Biochemical Parasitology. 124(1-2):73-78.
Elman H, Ramage A, Silvester DJ.  2007.  IFISS: A Matlab toolbox for modelling incompressible flow. ACM Transactions on Mathematical Software. 33(2)
Le Moigne J, Cole-Rhodes A, Eastman R, Jain P, Joshua A, Memarsadeghi N, Mount D, Netanyahu N, Morisette J, Uko-Ozoro E.  2006.  Image Registration and Fusion Studies for the Integration of Multiple Remote Sensing Data. Acoustics, Speech and Signal Processing, 2006. ICASSP 2006 Proceedings. 2006 IEEE International Conference on. 5:V-V.
LeMoigne J, Netanyahu NS, Eastman RD.  2011.  Image Registration for Remote Sensing. :515.
Lim S-N, Elgammal A, Davis LS.  2003.  Image-based pan-tilt camera control in a multi-camera surveillance environment. Multimedia and Expo, 2003. ICME '03. Proceedings. 2003 International Conference on. 1:I-645-8vol.1-I-645-8vol.1.
Eckman BA, Gaasterland T, Lacroix Z, Raschid L, Snyder B, Vidal ME.  2006.  Implementing a bioinformatics pipeline (bip) on a mediator platform: Comparing cost and quality of alternate choices. Data Engineering Workshops, 2006. Proceedings. 22nd International Conference on. :67-67.
Giraud-Carrier C, Dunham MH, Atreya A, Elkan C, Perlich C, Swirszcz G, Shi X, Philip SY, Fürnkranz J, Sima JF.  2010.  On the importance of sharing negative results. SIGKDD explorations. 12(2):3-4.
Eaton C, Memon AM.  2004.  Improving browsing environment compliance evaluations for websites. Proceedings of the International Workshop on Web Quality (WQ'04).
Elman H, Golub GH.  1994.  Inexact and Preconditioned Uzawa Algorithms for Saddle Point Problems. SIAM Journal on Numerical Analysis. 31(6):1645-1661.
Bringaud F, Biteau N, Zuiderwijk E, Berriman M, El-Sayed NM, Ghedin E, Melville SE, Hall N, Baltz T.  2004.  The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. Molecular biology and evolution. 21(3):520-520.
Grinter RE, W. Edwards K, Chetty M, Poole ES, Sung J-Y, Yang J, Crabtree A, Tolmie P, Rodden T, Greenhalgh C et al..  2009.  The Ins and Outs of Home Networking: The Case for Useful and Usable Domestic Networking. ACM Trans. Comput.-Hum. Interact.. 16(2):8:1-8:28.
Calvert KL, Edwards KW, Feamster N, Grinter RE, Deng Y, Zhou X.  2011.  Instrumenting home networks. SIGCOMM Comput. Commun. Rev.. 41(1):84-89.
Wang L-S, Jensen S, Hannenhalli S.  2006.  An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics. 4023:225-234.
Edjlali G, Sussman A, Saltz J.  1997.  Interoperability of data parallel runtime libraries. IPPS. :451-451.
Baykal N, Reggia JA, Yalabik N, Erkmen A, Beksac MS.  1994.  Interpretation of Doppler blood flow velocity waveforms using neural networks.. Proceedings of the Annual Symposium on Computer Application in Medical Care. :865-865.

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