Publications

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Journal Articles
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.  2013.  TIGRFAMs and Genome Properties in 2013.. Nucleic Acids Res. 41(Database issue):D387-95.
Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.  2013.  TIGRFAMs and Genome Properties in 2013.. Nucleic Acids Res. 41(Database issue):D387-95.
Golub GH, Hansen P C, O'Leary DP.  1999.  Tikhonov Regularization and Total Least Squares. SIAM Journal on Matrix Analysis and Applications. 21(1):185-194.
Eom H, Hollingsworth J.  2001.  A tool to help tune where computation is performed. IEEE Transactions on Software Engineering. 27(7):618-629.
Hu Y, Zhai K, Edelman V, Boyd-Graber J.  Submitted.  Topic Models for Translation Domain Adaptation. mimno.infosci.cornell.edu.
Marchionini G, Haas S, Plaisant C, Shneiderman B, Hert C.  2005.  Toward a Statistical Knowledge Network (2004). Institute for Systems Research Technical Reports.
Marchionini G, Haas S, Plaisant C, Shneiderman B, Hert C.  2005.  Toward a Statistical Knowledge Network (2004). Institute for Systems Research Technical Reports.
Haas SW, Denn S, Locke D, Shneiderman B, Brown L.  2006.  Toward an enriched (and revitalized) sense of help: Summary of an ASIS&T 2005 panel session. Bulletin of the American Society for Information Science and Technology. 32(5):23-26.
Hu Q, Syal M, Gumerov NA, Duraiswami R, Leishman JG.  2011.  Toward improved aeromechanics simulations using recent advancements in scientific computing. Proceedings 67th Annual Forum of the American Helicopter Society. :3-5.
Deshpande A, Hicks MW.  2005.  Toward on-line schema evolution for non-stop systems. 11th High Performance Transaction Systems Workshop.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol Biol. 9:280-280.
Hicks MW, Swamy N, Tsang S.  2007.  Toward Specifying and Validating Cross-Domain Policies. Technical Reports from UMIACS.
Alam M, Sultana M, Nair BG, Sack BR, Sack DA, Siddique AK, Ali A, Huq A, Colwell RR.  2006.  Toxigenic Vibrio Cholerae in the Aquatic Environment of Mathbaria, Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72(4):2849-2855.
Dingermann T, Sharp S, Appel B, DeFranco D, Mount SM, Heiermann R, Pongs O, Söll D.  1981.  Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract. Nucleic Acids ResearchNucl. Acids Res.. 9(16):3907-3918.
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.
Hannenhalli S, Levy S.  2003.  Transcriptional regulation of protein complexes and biological pathways. Mammalian Genome. 14(9):611-619.
Everett LJ, Jensen ST, Hannenhalli S.  2011.  Transcriptional Regulation Via TF-Modifying Enzymes: An Integrative Model-Based Analysis. Nucleic Acids ResearchNucl. Acids Res.. 39(12):e78-e78-e78-e78.
Hannenhalli S, Pevzner PA.  1999.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACM. 46(1):1-27.
Singh LN, Wang L-S, Hannenhalli S.  2007.  TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic Acids Research. 35(21):7360-7371.
Tilghman S, Astin HS, Brinkley W, Chilton MD, Cummings MP, Ehrenberg RG, Fox MF, Glenn K, Green PJ, Hans S et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol Cell. 9(11):3007-3015.
Phang KY, Foster JS, Hicks MW, Sazawal V.  2009.  Triaging Checklists: a Substitute for a PhD in Static Analysis. Evaluation and Usability of Programming Languages and Tools (PLATEAU) PLATEAU 2009.
Litwin WA, Roussopoulos N, Levy G, Hong W.  1991.  Trie hashing with controlled load. IEEE Transactions on Software Engineering. 17(7):678-691.
Shneiderman B, Hewett T.  2000.  A Trip Report on Creativity and Cognition 1999: An Insider's Report on a Far Out Conference. SIGCHI BULLETIN. 32(1):43-46.

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