Publications

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2009
Navlakha S, White JR, Nagarajan N, Pop M, Kingsford C.  2009.  Finding Biologically Accurate Clusterings in Hierarchical Decompositions Using the Variation of Information. Lecture Notes in Computer Science: Research in Computational Molecular Biology. 5541:400-417.
Navlakha S, White JR, Nagarajan N, Pop M, Kingsford C.  2009.  Finding Biologically Accurate Clusterings in Hierarchical Decompositions Using the Variation of Information. Lecture Notes in Computer Science: Research in Computational Molecular Biology. 5541:400-417.
Navlakha S, White J, Nagarajan N, Pop M, Kingsford C.  2009.  Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. Research in Computational Molecular Biology. 5541:400-417.
Navlakha S, White J, Nagarajan N, Pop M, Kingsford C.  2009.  Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. Research in Computational Molecular Biology. 5541:400-417.
Namata, Jr. G MS, Getoor L.  2009.  Identifying graphs from noisy and incomplete data. Proceedings of the 1st ACM SIGKDD Workshop on Knowledge Discovery from Uncertain Data. :23-29.
ter Hofte H, Jensen K L, Nurmi P, Froehlich J.  2009.  Mobile Living Labs 09: Methods and Tools for Evaluation in the Wild. Proceedings of the 11th International Conference on Human-Computer Interaction with Mobile Devices and Services. :107:1–107:2-107:1–107:2.
Dumitras T, Narasimhan P.  2009.  No Downtime for Data Conversions: Rethinking Hot Upgrades (CMU-PDL-09-106). Parallel Data Laboratory.
Somasundaran S, Namata G, Getoor L, Wiebe J.  2009.  Opinion graphs for polarity and discourse classification. Proceedings of the 2009 Workshop on Graph-based Methods for Natural Language Processing. :66-74.
Nagarajan N, Pop M.  2009.  Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. Journal of Computational Biology. 16(7):897-908.
Au T-C, Kuter U, Nau DS.  2009.  Planning for Interactions among Autonomous Agents. Programming Multi-Agent Systems. 5442:1-23.
Clark R, Feamster N, Nayak A, Reimers A.  2009.  Pushing Enterprise Security Down the Network Stack. GT-CS-09-03
Nayak A K, Reimers A, Feamster N, Clark R.  2009.  Resonance: dynamic access control for enterprise networks. Proceedings of the 1st ACM workshop on Research on enterprise networking. :11-18.
Navlakha S, Schatz MC, Kingsford C.  2009.  Revealing biological modules via graph summarization. Journal of Computational Biology. 16(2):253-264.
Neamtiu I, Hicks MW.  2009.  Safe and timely updates to multi-threaded programs. SIGPLAN Not.. 44(6):13-24.
Dumitras T, Neamtiu I, Tilevich E.  2009.  Second ACM Workshop on Hot Topics in Software Upgrades (HotSWUp 2009). :705-706.
Froehlich J, Neumann J, Oliver N.  2009.  Sensing and predicting the pulse of the city through shared bicycling. International Joint Conference on Artificial Intelligence. :1420-1426.
Alam M, Chowdhury WB, Bhuiyan NA, Islam A, Hasan NA, Nair BG, Watanabe H, Siddique AK, Huq A, Sack BR et al..  2009.  Serogroup, Virulence, and Genetic Traits of Vibrio Parahaemolyticus in the Estuarine Ecosystem of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75(19):6268-6274.
Ma X, Boyd-Graber J, Nikolova S, Cook PR.  2009.  Speaking through pictures: images vs. icons. Proceedings of the 11th international ACM SIGACCESS conference on Computers and accessibility. :163-170.
White J R, Nagarajan N, Pop M.  2009.  Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput Biology. 5(4):e1000352-e1000352.
Somasundaran S, Namata G, Wiebe J, Getoor L.  2009.  Supervised and unsupervised methods in employing discourse relations for improving opinion polarity classification. Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 1 - Volume 1. :170-179.
Kuter U, Nau DS, Pistore M, Traverso P.  2009.  Task decomposition on abstract states, for planning under nondeterminism. Artificial Intelligence. 173(5–6):669-695.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Dumitras T, Narasimhan P.  2009.  Toward Upgrades-as-a-service in Distributed Systems. Middleware'09 Proceedings of the 10th ACM/IFIP/USENIX International Conference on Middleware. :29:1-29:2.
Alford R, Kuter U, Nau DS.  2009.  Translating HTNs to PDDL: A small amount of domain knowledge can go a long way. :1629-1634.

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