Publications

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2012
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP et al..  2012.  BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
Gevers D, Pop M, Schloss PD, Huttenhower C.  2012.  Bioinformatics for the Human Microbiome Project. PLoS Computational Biology. 8(11):e1002779.
Xie B, Tom Yeh, Walsh G, Watkins I, Huang M.  2012.  Co-designing an e-health tutorial for older adults. Proceedings of the 2012 iConference. :240-247.
Han B, Davis LS.  2012.  Density-Based Multifeature Background Subtraction with Support Vector Machine. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 34(5):1017-1023.
Huq A, Haley BJ, Taviani E, Chen A, Hasan NA, Colwell RR.  2012.  Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in Microbiology. 26(1)
Huq A, Haley BJ, Taviani E, Chen A, Hasan NA, Colwell RR.  2012.  Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in Microbiology. 26(1)
Huq A, Haley BJ, Taviani E, Chen A, Hasan NA, Colwell RR.  2012.  Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in Microbiology. 26(1)
Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive and Mobile Computing. 8(1):82-102.
Rotman D, Preece J, Hammock J, Procita K, Hansen D, Parr C, Lewis D, Jacobs DW.  2012.  Dynamic changes in motivation in collaborative citizen-science projects. Proceedings of the ACM 2012 conference on Computer Supported Cooperative Work. :217-226.
Rotman D, Preece J, Hammock J, Procita K, Hansen D, Parr C, Lewis D, Jacobs DW.  2012.  Dynamic changes in motivation in collaborative citizen-science projects. Proceedings of the ACM 2012 conference on Computer Supported Cooperative Work. :217-226.
Johnson CN, Bowers JC, Griffitt KJ, Molina V, Clostio RW, Pei S, Laws E, Paranjpye RN, Strom MS, Chen A et al..  2012.  Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States). Applied and Environmental Microbiology. (20):7249-7257.
Johnson CN, Bowers JC, Griffitt KJ, Molina V, Clostio RW, Pei S, Laws E, Paranjpye RN, Strom MS, Chen A et al..  2012.  Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States). Applied and Environmental Microbiology. (20):7249-7257.
Hu Y, Boyd-Graber J.  2012.  Efficient Tree-Based Topic Modeling. Association for Computational Linguistics.
Larson E, Froehlich J, Campbell T, Haggerty C, Atlas L, Fogarty J, Patel SN.  2012.  Fast track article: Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive Mob. Comput.. 8(1):82-102.
Hara K, Le V, Froehlich J.  2012.  A feasibility study of crowdsourcing and google street view to determine sidewalk accessibility. :273-274.
Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH.  2012.  A framework for human microbiome research. Nature. 486:215-221.
Rashed S.M, Mannan S.B, Johura F.-T., Islam M.T, Sadique A., Watanabe H., Sack R.B, Huq A., Colwell RR, Cravioto A. et al..  2012.  Genetic characteristics of drug-resistant Vibrio cholerae O1 causing endemic cholera in Dhaka, 2006-2011. Journal of Medical Microbiology. :1736-1745.
Taviani E, Spagnoletti M, Ceccarelli D, Haley BJ, Hasan NA, Chen A, Colombo MM, Huq A, Colwell RR.  2012.  Genomic analysis of ICE Vch Ban8: An atypical genetic element in Vibrio cholerae. FEBS Letters. (11):1617-1621.
Taviani E, Spagnoletti M, Ceccarelli D, Haley BJ, Hasan NA, Chen A, Colombo MM, Huq A, Colwell RR.  2012.  Genomic analysis of ICE Vch Ban8: An atypical genetic element in Vibrio cholerae. FEBS Letters. (11):1617-1621.
Taviani E, Spagnoletti M, Ceccarelli D, Haley BJ, Hasan NA, Chen A, Colombo MM, Huq A, Colwell RR.  2012.  Genomic analysis of ICE Vch Ban8: An atypical genetic element in Vibrio cholerae. FEBS Letters. (11):1617-1621.
Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.
Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.
Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.
Hasan N.A, Choi S.Y, Eppinger M., Clark P.W, Chen A., Alam M., Haley B.J, Taviani E., Hine E., Su Q. et al..  2012.  Genomic diversity of 2010 Haitian cholera outbreak strains. Proceedings of the National Academy of Sciences. :E2010-E2017.

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